LOC100516039 (C-C motif chemokine 23) - Rat Genome Database

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Gene: LOC100516039 (C-C motif chemokine 23) Sus scrofa
Analyze
Symbol: LOC100516039
Name: C-C motif chemokine 23
RGD ID: 14026677
Description: ENCODES a protein that exhibits CCR1 chemokine receptor binding (ortholog); INVOLVED IN cell chemotaxis (inferred); chemotaxis (inferred); immune response (inferred); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine ligand 23; CCL23
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11239,591,521 - 39,595,639 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,160,997 - 41,165,134 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:28694169   PMID:30032202  


Genomics

Comparative Map Data
LOC100516039
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11239,591,521 - 39,595,639 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,160,997 - 41,165,134 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,013,058 - 36,017,972 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,013,056 - 36,017,972 (-)Ensemblhg38GRCh38
GRCh371734,340,098 - 34,345,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,364,210 - 31,369,118 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341731,364,209 - 31,369,118NCBI
Celera1731,249,651 - 31,254,560 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,524,964 - 30,529,874 (-)NCBIHuRef
CHM1_11734,404,627 - 34,409,539 (-)NCBICHM1_1
T2T-CHM13v2.01736,960,963 - 36,965,877 (-)NCBIT2T-CHM13v2.0
Ccl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,478,712 - 83,483,913 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,478,708 - 83,483,913 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381183,587,886 - 83,593,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,587,882 - 83,593,087 (-)Ensemblmm10GRCm38
MGSCv371183,401,388 - 83,406,589 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361183,404,087 - 83,409,185 (-)NCBIMGSCv36mm8
Celera1193,192,253 - 93,197,479 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.85NCBI
CCL15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,476,389 - 28,481,332 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,355,331 - 30,360,338 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,793,702 - 20,809,383 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,089,791 - 21,108,206 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,089,791 - 21,095,047 (+)EnsemblpanPan2panpan1.1
CCL23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,763,342 - 37,767,011 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,986,009 - 36,989,702 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0938,572,827 - 38,576,720 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,572,912 - 38,577,611 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,357,583 - 37,361,015 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,641,750 - 37,645,443 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,728,778 - 37,732,670 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC103242761
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,488,060 - 29,493,808 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666075481,906 - 486,927 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100516039
172 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 5 3

Sequence


RefSeq Acc Id: XM_003131712   ⟹   XP_003131760
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11239,591,521 - 39,595,639 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003131760 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000036324
  ENSSSCP00000036324.3
  ENSSSCP00015011760.1
  ENSSSCP00025011946.1
  ENSSSCP00040048510.1
  ENSSSCP00060012262.1
  ENSSSCP00065047508.1
GenBank Protein JAG69666 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003131760   ⟸   XM_003131712
- UniProtKB: A0A286ZXS6 (UniProtKB/TrEMBL),   A0A8D1UP34 (UniProtKB/TrEMBL),   A0A0B8RW11 (UniProtKB/TrEMBL),   A0A8D0N1B9 (UniProtKB/TrEMBL),   A0A8D1G9A2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033457 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015022519 UniProtKB/TrEMBL
  ENSSSCG00025020802 UniProtKB/TrEMBL
  ENSSSCG00040076016 UniProtKB/TrEMBL
  ENSSSCG00060021108 UniProtKB/TrEMBL
  ENSSSCG00065077218 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057909 ENTREZGENE
  ENSSSCT00000057909.3 UniProtKB/TrEMBL
  ENSSSCT00015029795.1 UniProtKB/TrEMBL
  ENSSSCT00025028227.1 UniProtKB/TrEMBL
  ENSSSCT00040105746.1 UniProtKB/TrEMBL
  ENSSSCT00060028610.1 UniProtKB/TrEMBL
  ENSSSCT00065106753.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report ssc:100516039 UniProtKB/TrEMBL
NCBI Gene LOC100516039 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 15 UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A0B8RW11 ENTREZGENE
  A0A286ZXS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0N1B9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G9A2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UP34 ENTREZGENE, UniProtKB/TrEMBL