MTMR7 (myotubularin related protein 7) - Rat Genome Database

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Pathways
Gene: MTMR7 (myotubularin related protein 7) Sus scrofa
Analyze
Symbol: MTMR7
Name: myotubularin related protein 7
RGD ID: 14009132
Description: ENCODES a protein that exhibits inositol bisphosphate phosphatase activity (ortholog); INVOLVED IN phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endomembrane system (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,006,623 - 5,122,201 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,007,560 - 5,122,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,450,626 - 5,606,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA)
endomembrane system  (IEA)
membrane  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
MTMR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,006,623 - 5,122,201 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1175,007,560 - 5,122,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,450,626 - 5,606,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38817,296,794 - 17,413,351 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl817,296,794 - 17,413,528 (-)Ensemblhg38GRCh38
GRCh37817,154,303 - 17,270,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,199,910 - 17,315,207 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34817,199,912 - 17,315,207NCBI
Celera816,120,349 - 16,236,789 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef815,699,174 - 15,815,604 (-)NCBIHuRef
CHM1_1817,355,759 - 17,472,502 (-)NCBICHM1_1
T2T-CHM13v2.0817,564,397 - 17,680,622 (-)NCBIT2T-CHM13v2.0
Mtmr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,003,184 - 41,088,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,004,136 - 41,087,840 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38840,548,199 - 40,634,935 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,551,095 - 40,634,797 (-)Ensemblmm10GRCm38
MGSCv37841,635,513 - 41,720,146 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36842,049,912 - 42,133,603 (-)NCBIMGSCv36mm8
Celera843,199,612 - 43,280,509 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Mtmr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81658,344,755 - 58,435,682 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1658,344,767 - 58,436,615 (+)EnsemblGRCr8
mRatBN7.21651,641,267 - 51,732,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,641,190 - 51,732,182 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1656,971,662 - 57,062,850 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01660,360,345 - 60,451,266 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01655,605,616 - 55,696,804 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1658,266,103 - 58,357,024 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1659,652,405 - 59,743,332 (+)NCBILyon_Normotensive
Lyon_Hypertensive1660,126,502 - 60,217,429 (+)NCBILyon_Hypertensive
F344_StmMcwi1656,309,845 - 56,401,029 (+)NCBIF344_StmMcwi
Rnor_6.01654,765,214 - 54,856,255 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,765,325 - 54,856,225 (+)Ensemblrn6Rnor6.0
Rnor_5.01654,469,045 - 54,560,088 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41654,982,204 - 55,073,152 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1649,533,566 - 49,624,432 (+)NCBICelera
RGSC_v3.11654,982,286 - 55,073,225 (+)NCBI
Cytogenetic Map16q12.1NCBI
Mtmr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555522,298,597 - 2,411,733 (+)Ensembl
ChiLan1.0NW_0049555522,298,597 - 2,412,579 (+)NCBIChiLan1.0ChiLan1.0
MTMR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2735,756,455 - 35,872,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1811,490,982 - 11,607,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0816,509,712 - 16,626,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1813,454,694 - 13,571,130 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl813,454,694 - 13,571,706 (-)EnsemblpanPan2panpan1.1
MTMR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,638,636 - 40,810,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,641,822 - 40,809,562 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1641,138,303 - 41,312,247 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01642,694,555 - 42,867,330 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1642,694,559 - 42,859,630 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11640,788,134 - 40,960,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,331,141 - 41,504,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01641,524,700 - 41,698,742 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mtmr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494338,707,838 - 38,796,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365736,346,792 - 6,434,472 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365736,346,106 - 6,434,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1815,386,186 - 15,498,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl815,387,958 - 15,498,905 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605226,779,318 - 26,895,406 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476921,889,747 - 21,984,550 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476921,889,723 - 21,987,888 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mtmr7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11346,830,041 - 46,925,674 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in MTMR7
6128 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007650   ⟹   ENSSSCP00000007443
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,011,896 - 5,122,201 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059887   ⟹   ENSSSCP00000044589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl175,006,623 - 5,122,113 (-)Ensembl
RefSeq Acc Id: XM_003134197   ⟹   XP_003134245
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1175,007,560 - 5,122,367 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003134245   ⟸   XM_003134197
- UniProtKB: A0A8D1QNM8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000044589   ⟸   ENSSSCT00000059887
Ensembl Acc Id: ENSSSCP00000007443   ⟸   ENSSSCT00000007650

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015065106 UniProtKB/TrEMBL
  ENSSSCG00025076865 UniProtKB/TrEMBL
  ENSSSCG00035068829 UniProtKB/TrEMBL
  ENSSSCG00045034004 UniProtKB/TrEMBL
  ENSSSCG00055012825 UniProtKB/TrEMBL
  ENSSSCG00060041435 UniProtKB/TrEMBL
  ENSSSCG00070013401 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007650.5 UniProtKB/TrEMBL
  ENSSSCT00000059887 ENTREZGENE
  ENSSSCT00000059887.3 UniProtKB/TrEMBL
  ENSSSCT00015087157.1 UniProtKB/TrEMBL
  ENSSSCT00015087254.1 UniProtKB/TrEMBL
  ENSSSCT00015087422.1 UniProtKB/TrEMBL
  ENSSSCT00015087522.1 UniProtKB/TrEMBL
  ENSSSCT00025106618.1 UniProtKB/TrEMBL
  ENSSSCT00025106634.1 UniProtKB/TrEMBL
  ENSSSCT00025106644.1 UniProtKB/TrEMBL
  ENSSSCT00035092930.1 UniProtKB/TrEMBL
  ENSSSCT00035092954.1 UniProtKB/TrEMBL
  ENSSSCT00035092967.1 UniProtKB/TrEMBL
  ENSSSCT00045058605.1 UniProtKB/TrEMBL
  ENSSSCT00045058711.1 UniProtKB/TrEMBL
  ENSSSCT00055025639.1 UniProtKB/TrEMBL
  ENSSSCT00055025711.1 UniProtKB/TrEMBL
  ENSSSCT00060056171.1 UniProtKB/TrEMBL
  ENSSSCT00070026154.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro MTMR7 UniProtKB/TrEMBL
  MTMR7_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
KEGG Report ssc:100516469 UniProtKB/TrEMBL
NCBI Gene MTMR7 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF35 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
  PH-GRAM_MTMR6-like UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A287AKQ9_PIG UniProtKB/TrEMBL
  A0A480JMN9_PIG UniProtKB/TrEMBL
  A0A4X1U1N4_PIG UniProtKB/TrEMBL
  A0A8D0PL99_PIG UniProtKB/TrEMBL
  A0A8D0PLC5_PIG UniProtKB/TrEMBL
  A0A8D0PME1_PIG UniProtKB/TrEMBL
  A0A8D0TJP5_PIG UniProtKB/TrEMBL
  A0A8D1QNM8 ENTREZGENE, UniProtKB/TrEMBL
  F1SET5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:108726 ENTREZGENE