Mtmr7 (myotubularin related protein 7) - Rat Genome Database

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Gene: Mtmr7 (myotubularin related protein 7) Rattus norvegicus
Analyze
Symbol: Mtmr7
Name: myotubularin related protein 7
RGD ID: 1306608
Description: Predicted to enable inositol bisphosphate phosphatase activity and phosphatidylinositol-3-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to act upstream of or within inositol phosphate dephosphorylation. Predicted to be located in cytosol. Predicted to be active in cytoplasm and membrane. Orthologous to human MTMR7 (myotubularin related protein 7); PARTICIPATES IN fructose and mannose metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306490; myotubularin-related protein 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21651,641,225 - 51,732,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,641,190 - 51,732,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,971,662 - 57,062,850 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01660,360,345 - 60,451,266 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01655,605,616 - 55,696,804 (+)NCBIRnor_WKY
Rnor_6.01654,765,214 - 54,856,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,765,325 - 54,856,225 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01654,469,045 - 54,560,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,982,204 - 55,073,152 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,982,286 - 55,073,225 (+)NCBI
Celera1649,533,566 - 49,624,432 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12890864   PMID:16787938  


Genomics

Comparative Map Data
Mtmr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21651,641,225 - 51,732,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1651,641,190 - 51,732,182 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1656,971,662 - 57,062,850 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01660,360,345 - 60,451,266 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01655,605,616 - 55,696,804 (+)NCBIRnor_WKY
Rnor_6.01654,765,214 - 54,856,255 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,765,325 - 54,856,225 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01654,469,045 - 54,560,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,982,204 - 55,073,152 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11654,982,286 - 55,073,225 (+)NCBI
Celera1649,533,566 - 49,624,432 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
MTMR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38817,296,794 - 17,413,351 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl817,296,794 - 17,413,528 (-)EnsemblGRCh38hg38GRCh38
GRCh37817,154,303 - 17,270,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,199,910 - 17,315,207 (-)NCBINCBI36Build 36hg18NCBI36
Build 34817,199,912 - 17,315,207NCBI
Celera816,120,349 - 16,236,789 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef815,699,174 - 15,815,604 (-)NCBIHuRef
CHM1_1817,355,759 - 17,472,502 (-)NCBICHM1_1
T2T-CHM13v2.0817,564,397 - 17,680,622 (-)NCBIT2T-CHM13v2.0
Mtmr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,003,184 - 41,088,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl841,004,136 - 41,087,840 (-)EnsemblGRCm39 Ensembl
GRCm38840,548,199 - 40,634,935 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,551,095 - 40,634,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv37841,635,513 - 41,720,146 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36842,049,912 - 42,133,603 (-)NCBIMGSCv36mm8
Celera843,199,612 - 43,280,509 (-)NCBICelera
Cytogenetic Map8A4NCBI
Mtmr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555522,298,597 - 2,411,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555522,298,597 - 2,412,579 (+)NCBIChiLan1.0ChiLan1.0
MTMR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1813,454,694 - 13,571,130 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl813,454,694 - 13,571,706 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0816,509,712 - 16,626,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTMR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,638,636 - 40,810,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,641,822 - 40,809,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1641,138,303 - 41,312,247 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01642,694,555 - 42,867,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1642,694,559 - 42,859,630 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11640,788,134 - 40,960,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,331,141 - 41,504,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01641,524,700 - 41,698,742 (-)NCBIUU_Cfam_GSD_1.0
Mtmr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494338,707,838 - 38,796,292 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365736,346,106 - 6,434,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,006,623 - 5,122,201 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,007,560 - 5,122,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,450,626 - 5,606,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1815,386,186 - 15,498,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl815,387,958 - 15,498,905 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605226,779,318 - 26,895,406 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476921,889,747 - 21,984,550 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476921,889,723 - 21,987,888 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH130083  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21651,731,871 - 51,732,114 (+)MAPPERmRatBN7.2
Rnor_6.01654,855,915 - 54,856,157NCBIRnor6.0
Rnor_5.01654,559,752 - 54,559,994UniSTSRnor5.0
RGSC_v3.41655,072,842 - 55,073,084UniSTSRGSC3.4
Celera1649,624,122 - 49,624,364UniSTS
RH 3.4 Map16521.2UniSTS
Cytogenetic Map16q12.1UniSTS
BE119707  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21651,674,994 - 51,675,162 (+)MAPPERmRatBN7.2
Rnor_6.01654,799,038 - 54,799,205NCBIRnor6.0
Rnor_5.01654,502,769 - 54,502,936UniSTSRnor5.0
RGSC_v3.41655,015,917 - 55,016,084UniSTSRGSC3.4
Celera1649,567,267 - 49,567,434UniSTS
RH 3.4 Map16524.8UniSTS
Cytogenetic Map16q12.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:581
Count of miRNA genes:256
Interacting mature miRNAs:327
Transcripts:ENSRNOT00000065327
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 15 9 6 9 74 8 15
Low 3 24 40 30 13 30 8 10 27 26 11 8
Below cutoff 15 2 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000065327   ⟹   ENSRNOP00000059684
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,641,283 - 51,732,182 (+)Ensembl
Rnor_6.0 Ensembl1654,765,325 - 54,856,225 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086899   ⟹   ENSRNOP00000071921
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,641,296 - 51,732,182 (+)Ensembl
Rnor_6.0 Ensembl1654,765,347 - 54,855,968 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098681   ⟹   ENSRNOP00000088279
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,668,023 - 51,732,182 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105685   ⟹   ENSRNOP00000091098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1651,641,190 - 51,732,182 (+)Ensembl
RefSeq Acc Id: NM_001107312   ⟹   NP_001100782
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,641,283 - 51,732,182 (+)NCBI
Rnor_6.01654,765,325 - 54,856,225 (+)NCBI
Rnor_5.01654,469,045 - 54,560,088 (+)NCBI
RGSC_v3.41654,982,204 - 55,073,152 (+)RGD
Celera1649,533,566 - 49,624,432 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253195   ⟹   XP_006253257
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,641,225 - 51,731,727 (+)NCBI
Rnor_6.01654,765,214 - 54,855,770 (+)NCBI
Rnor_5.01654,469,045 - 54,560,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094528   ⟹   XP_038950456
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,641,313 - 51,732,212 (+)NCBI
RefSeq Acc Id: XM_039094529   ⟹   XP_038950457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,641,267 - 51,732,212 (+)NCBI
RefSeq Acc Id: XM_039094531   ⟹   XP_038950459
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,681,956 - 51,732,212 (+)NCBI
RefSeq Acc Id: XM_039094532   ⟹   XP_038950460
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,682,447 - 51,732,212 (+)NCBI
RefSeq Acc Id: XM_039094533   ⟹   XP_038950461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21651,697,787 - 51,732,212 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100782   ⟸   NM_001107312
- UniProtKB: A0A0G2K1P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253257   ⟸   XM_006253195
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K1P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000059684   ⟸   ENSRNOT00000065327
RefSeq Acc Id: ENSRNOP00000071921   ⟸   ENSRNOT00000086899
RefSeq Acc Id: XP_038950457   ⟸   XM_039094529
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950456   ⟸   XM_039094528
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950459   ⟸   XM_039094531
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950460   ⟸   XM_039094532
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950461   ⟸   XM_039094533
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000088279   ⟸   ENSRNOT00000098681
RefSeq Acc Id: ENSRNOP00000091098   ⟸   ENSRNOT00000105685
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1P1-F1-model_v2 AlphaFold A0A0G2K1P1 1-660 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 54766739 54766740 A T snv MNS/Gib (RGD), BBDP/Wor (RGD)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306608 AgrOrtholog
BioCyc Gene G2FUF-11245 BioCyc
Ensembl Genes ENSRNOG00000011420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059684 ENTREZGENE
  ENSRNOP00000059684.1 UniProtKB/TrEMBL
  ENSRNOP00000071921 ENTREZGENE
  ENSRNOP00000071921.2 UniProtKB/TrEMBL
  ENSRNOP00000088279.1 UniProtKB/TrEMBL
  ENSRNOP00000091098 ENTREZGENE
  ENSRNOP00000091098.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065327 ENTREZGENE
  ENSRNOT00000065327.3 UniProtKB/TrEMBL
  ENSRNOT00000086899 ENTREZGENE
  ENSRNOT00000086899.2 UniProtKB/TrEMBL
  ENSRNOT00000098681.1 UniProtKB/TrEMBL
  ENSRNOT00000105685 ENTREZGENE
  ENSRNOT00000105685.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro MTMR7 UniProtKB/TrEMBL
  MTMR7_PH-GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH/PTB_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr/Dual-specificity_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
KEGG Report rno:306490 UniProtKB/TrEMBL
NCBI Gene 306490 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF35 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
PhenoGen Mtmr7 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2K1P1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEZ2_RAT UniProtKB/TrEMBL
  A0A8I6GGY0_RAT UniProtKB/TrEMBL
  D3ZTB0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mtmr7  myotubularin related protein 7   Mtmr7_predicted  myotubularin related protein 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mtmr7_predicted  myotubularin related protein 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED