LALBA (lactalbumin alpha) - Rat Genome Database

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Gene: LALBA (lactalbumin alpha) Sus scrofa
Analyze
Symbol: LALBA
Name: lactalbumin alpha
RGD ID: 13971259
Description: ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); INVOLVED IN lactose biosynthetic process (inferred); PARTICIPATES IN Glut1 deficiency syndrome pathway; lactose biosynthetic pathway; ASSOCIATED WITH colon cancer (ortholog); gastroenteritis (ortholog); FOUND IN extracellular region (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha-lactalbumin; lactose synthase B protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,214,505 - 79,216,791 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1579,214,487 - 79,216,791 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,539,971 - 82,542,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:1537566   PMID:2222864   PMID:22301074  


Genomics

Comparative Map Data
LALBA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,214,505 - 79,216,791 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1579,214,487 - 79,216,791 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,539,971 - 82,542,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LALBA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,567,684 - 48,571,845 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,567,684 - 48,570,066 (-)Ensemblhg38GRCh38
GRCh371248,961,467 - 48,965,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,247,734 - 47,250,096 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341247,247,734 - 47,250,096NCBI
Celera1247,757,465 - 47,759,827 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1245,995,555 - 45,997,917 (-)NCBIHuRef
CHM1_11248,927,287 - 48,929,649 (-)NCBICHM1_1
T2T-CHM13v2.01248,529,699 - 48,533,867 (-)NCBIT2T-CHM13v2.0
Lalba
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,378,281 - 98,380,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,378,281 - 98,380,602 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381598,480,400 - 98,482,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,480,400 - 98,482,721 (-)Ensemblmm10GRCm38
MGSCv371598,310,831 - 98,313,114 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361598,308,434 - 98,310,717 (-)NCBIMGSCv36mm8
Celera15100,627,451 - 100,629,779 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.48NCBI
Lalba
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,504,572 - 131,520,707 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7131,504,572 - 131,507,072 (-)EnsemblGRCr8
mRatBN7.27129,625,531 - 129,628,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,625,535 - 129,628,061 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7131,432,976 - 131,435,228 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,658,521 - 133,660,776 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,571,012 - 133,573,264 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd7133,587,436 - 133,589,921 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive7134,538,713 - 134,541,198 (-)NCBILyon_Normotensive
Lyon_Hypertensive7134,666,241 - 134,668,726 (-)NCBILyon_Hypertensive
F344_StmMcwi7133,110,927 - 133,113,412 (-)NCBIF344_StmMcwi
Rnor_6.07140,088,420 - 140,096,347 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,088,421 - 140,090,922 (-)Ensemblrn6Rnor6.0
Rnor_5.07139,231,203 - 139,233,459 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47137,220,916 - 137,223,614 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7126,117,233 - 126,119,018 (-)NCBICelera
RGSC_v3.17137,297,352 - 137,300,051 (-)NCBI
Cytogenetic Map7q36NCBI
Lalba
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,487,603 - 7,489,573 (-)Ensembl
ChiLan1.0NW_0049555007,487,603 - 7,489,573 (-)NCBIChiLan1.0ChiLan1.0
LALBA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,610,745 - 45,615,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,607,661 - 45,611,941 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01240,178,422 - 40,180,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11241,055,189 - 41,057,565 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,055,189 - 41,057,565 (+)EnsemblpanPan2panpan1.1
LALBA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,898,674 - 5,900,688 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,874,879 - 5,900,686 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2740,357,753 - 40,359,766 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0275,949,754 - 5,951,770 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,949,754 - 5,951,768 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,912,583 - 5,914,594 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,903,319 - 5,905,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,749,445 - 40,751,461 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lalba
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,682,105 - 66,684,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,480,955 - 6,482,725 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,480,955 - 6,482,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LALBA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,816,340 - 44,819,407 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1144,816,613 - 44,818,673 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037201,328,409 - 201,332,576 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lalba
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,547,540 - 3,549,441 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248163,546,727 - 3,549,589 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lalba
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11271,295,927 - 271,298,391 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in LALBA
65 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000025257   ⟹   ENSSSCP00000024183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl579,214,505 - 79,216,791 (-)Ensembl
RefSeq Acc Id: NM_214360   ⟹   NP_999525
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1579,214,487 - 79,216,791 (-)NCBI
Sequence:
RefSeq Acc Id: NP_999525   ⟸   NM_214360
- Peptide Label: precursor
- UniProtKB: P18137 (UniProtKB/Swiss-Prot),   A0A8D1H2L5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024183   ⟸   ENSSSCT00000025257
Protein Domains
C-type lysozyme   Glycosyl hydrolases family 22 (GH22)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024573 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015053812 UniProtKB/Swiss-Prot
  ENSSSCG00025058072 UniProtKB/Swiss-Prot
  ENSSSCG00030066079 UniProtKB/Swiss-Prot
  ENSSSCG00035067467 UniProtKB/Swiss-Prot
  ENSSSCG00040072476 UniProtKB/Swiss-Prot
  ENSSSCG00050046729 UniProtKB/Swiss-Prot
  ENSSSCG00055000939 UniProtKB/Swiss-Prot
  ENSSSCG00060040757 UniProtKB/Swiss-Prot
  ENSSSCG00065035655 UniProtKB/Swiss-Prot
  ENSSSCG00070007907 UniProtKB/Swiss-Prot
  ENSSSCG00090021733 UniProtKB/Swiss-Prot
  ENSSSCG00105012500 UniProtKB/Swiss-Prot
  ENSSSCG00110001435 UniProtKB/Swiss-Prot
  ENSSSCG00115005564 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000025257 ENTREZGENE
  ENSSSCT00000025257.3 UniProtKB/Swiss-Prot
  ENSSSCT00015071737.1 UniProtKB/Swiss-Prot
  ENSSSCT00025079522.1 UniProtKB/Swiss-Prot
  ENSSSCT00030092348.1 UniProtKB/Swiss-Prot
  ENSSSCT00035091014.1 UniProtKB/Swiss-Prot
  ENSSSCT00040099823.1 UniProtKB/Swiss-Prot
  ENSSSCT00050063597.1 UniProtKB/Swiss-Prot
  ENSSSCT00055001666.1 UniProtKB/Swiss-Prot
  ENSSSCT00060055234.1 UniProtKB/Swiss-Prot
  ENSSSCT00065048580.1 UniProtKB/Swiss-Prot
  ENSSSCT00070015251.1 UniProtKB/Swiss-Prot
  ENSSSCT00090038505 UniProtKB/Swiss-Prot
  ENSSSCT00105024483 UniProtKB/Swiss-Prot
  ENSSSCT00110002923 UniProtKB/Swiss-Prot
  ENSSSCT00115009598 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.530.10 UniProtKB/Swiss-Prot
InterPro Glyco_hydro_22 UniProtKB/Swiss-Prot
  Glyco_hydro_22_CS UniProtKB/Swiss-Prot
  Lactalbumin UniProtKB/Swiss-Prot
  Lysozyme-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report ssc:397647 UniProtKB/Swiss-Prot
NCBI Gene LALBA ENTREZGENE
PANTHER PTHR11407 UniProtKB/Swiss-Prot
  PTHR11407:SF32 UniProtKB/Swiss-Prot
Pfam Lys UniProtKB/Swiss-Prot
PRINTS LACTALBUMIN UniProtKB/Swiss-Prot
  LYZLACT UniProtKB/Swiss-Prot
PROSITE LACTALBUMIN_LYSOZYME_1 UniProtKB/Swiss-Prot
  LACTALBUMIN_LYSOZYME_2 UniProtKB/Swiss-Prot
SMART LYZ1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53955 UniProtKB/Swiss-Prot
UniProt A0A8D1H2L5 ENTREZGENE, UniProtKB/TrEMBL
  LALBA_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:89618 ENTREZGENE