LRRC51 (leucine rich repeat containing 51) - Rat Genome Database

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Pathways
Gene: LRRC51 (leucine rich repeat containing 51) Sus scrofa
Analyze
Symbol: LRRC51
Name: leucine rich repeat containing 51
RGD ID: 13967454
Description: ASSOCIATED WITH Deafness (ortholog); FOUND IN cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine-rich repeat-containing protein 51; leucine-rich repeat-containing protein 51-like
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,663,134 - 6,673,271 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.196,663,122 - 6,673,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,424,595 - 7,434,763 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Deafness  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IBA)
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
LRRC51
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,663,134 - 6,673,271 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.196,663,122 - 6,673,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,424,595 - 7,434,763 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,080,850 - 72,096,895 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,080,286 - 72,096,895 (+)Ensemblhg38GRCh38
GRCh371171,791,896 - 71,807,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q13.4NCBI
T2T-CHM13v2.01172,007,754 - 72,023,785 (+)NCBIT2T-CHM13v2.0
Lrrc51
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,562,196 - 101,583,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,562,191 - 101,583,102 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm387101,912,989 - 101,933,918 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,912,984 - 101,933,895 (-)Ensemblmm10GRCm38
MGSCv377109,061,503 - 109,082,371 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367101,786,810 - 101,807,678 (-)NCBIMGSCv36mm8
Celera7102,287,315 - 102,307,976 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.69NCBI
Lrrc51
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,690,617 - 165,709,837 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1165,690,111 - 165,698,842 (-)EnsemblGRCr8
mRatBN7.21156,278,617 - 156,297,838 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,278,618 - 156,297,773 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1164,262,786 - 164,282,297 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,442,880 - 171,462,391 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,320,320 - 164,339,472 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1164,670,572 - 164,689,844 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1169,659,835 - 169,679,107 (-)NCBILyon_Normotensive
Lyon_Hypertensive1166,300,405 - 166,319,674 (-)NCBILyon_Hypertensive
F344_StmMcwi1164,885,623 - 164,904,771 (-)NCBIF344_StmMcwi
Rnor_6.01166,997,973 - 167,017,221 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,997,967 - 167,005,839 (-)Ensemblrn6Rnor6.0
Rnor_5.01173,188,730 - 173,207,955 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41159,373,973 - 159,393,171 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1154,352,276 - 154,371,433 (-)NCBICelera
Cytogenetic Map1q32NCBI
LRTOMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,987,687 - 26,000,545 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,987,433 - 26,000,327 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2125,757,351 - 25,770,000 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02126,196,534 - 26,209,457 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,196,280 - 26,203,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,987,792 - 26,000,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,203,917 - 26,216,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,105,548 - 26,118,189 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lrrc51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,845,418 - 59,852,618 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,447,282 - 1,452,087 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,446,065 - 1,465,127 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC51
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,284,632 - 63,299,924 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,293,676 - 63,302,691 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604362,598,884 - 62,614,491 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc51
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,880,178 - 4,888,901 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248174,880,176 - 4,895,924 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRC51
361 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 23 3 2 5 13 11 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000016154   ⟹   ENSSSCP00000015722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl96,663,134 - 6,673,266 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000088385   ⟹   ENSSSCP00000067467
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl96,665,976 - 6,673,271 (+)Ensembl
RefSeq Acc Id: NM_001282114   ⟹   NP_001269043
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.196,663,122 - 6,673,272 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282115   ⟹   NP_001269044
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.196,663,122 - 6,673,272 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001269043   ⟸   NM_001282114
- UniProtKB: A0A481BE94 (UniProtKB/TrEMBL),   A0A4X1V283 (UniProtKB/TrEMBL),   A0A480URG1 (UniProtKB/TrEMBL),   A0A8D1AMB0 (UniProtKB/TrEMBL),   A0A8D0PVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269044   ⟸   NM_001282115
- UniProtKB: A0A481BE94 (UniProtKB/TrEMBL),   A0A4X1V283 (UniProtKB/TrEMBL),   A0A480URG1 (UniProtKB/TrEMBL),   A0A8D1AMB0 (UniProtKB/TrEMBL),   A0A8D0PVN2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000067467   ⟸   ENSSSCT00000088385
Ensembl Acc Id: ENSSSCP00000015722   ⟸   ENSSSCT00000016154


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014803 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070421 UniProtKB/TrEMBL
  ENSSSCG00025014273 UniProtKB/TrEMBL
  ENSSSCG00030023033 UniProtKB/TrEMBL
  ENSSSCG00035062986 UniProtKB/TrEMBL
  ENSSSCG00040062865 UniProtKB/TrEMBL
  ENSSSCG00045039416 UniProtKB/TrEMBL
  ENSSSCG00050025739 UniProtKB/TrEMBL
  ENSSSCG00055027197 UniProtKB/TrEMBL
  ENSSSCG00065061589 UniProtKB/TrEMBL
  ENSSSCG00070021204 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016154 ENTREZGENE
  ENSSSCT00000016154.4 UniProtKB/TrEMBL
  ENSSSCT00000088385 ENTREZGENE
  ENSSSCT00000088385.1 UniProtKB/TrEMBL
  ENSSSCT00015094999.1 UniProtKB/TrEMBL
  ENSSSCT00015095429.1 UniProtKB/TrEMBL
  ENSSSCT00025019005.1 UniProtKB/TrEMBL
  ENSSSCT00025019062.1 UniProtKB/TrEMBL
  ENSSSCT00025019094.1 UniProtKB/TrEMBL
  ENSSSCT00030032012.1 UniProtKB/TrEMBL
  ENSSSCT00030032022.1 UniProtKB/TrEMBL
  ENSSSCT00035084688.1 UniProtKB/TrEMBL
  ENSSSCT00035084706.1 UniProtKB/TrEMBL
  ENSSSCT00040085699.1 UniProtKB/TrEMBL
  ENSSSCT00040085831.1 UniProtKB/TrEMBL
  ENSSSCT00040085948.1 UniProtKB/TrEMBL
  ENSSSCT00045068649.1 UniProtKB/TrEMBL
  ENSSSCT00045068650.1 UniProtKB/TrEMBL
  ENSSSCT00050034662.1 UniProtKB/TrEMBL
  ENSSSCT00050034667.1 UniProtKB/TrEMBL
  ENSSSCT00055053952.1 UniProtKB/TrEMBL
  ENSSSCT00055053996.1 UniProtKB/TrEMBL
  ENSSSCT00065084421.1 UniProtKB/TrEMBL
  ENSSSCT00065084432.1 UniProtKB/TrEMBL
  ENSSSCT00070042130.1 UniProtKB/TrEMBL
  ENSSSCT00070042151.1 UniProtKB/TrEMBL
  ENSSSCT00070042161.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100520208 UniProtKB/TrEMBL
NCBI Gene LRRC51 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 UniProtKB/TrEMBL
  PTHR46545 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRR_9 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A480URG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A481BE94 ENTREZGENE
  A0A4X1V283 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V2A4_PIG UniProtKB/TrEMBL
  A0A4X1V2T3_PIG UniProtKB/TrEMBL
  A0A8D0PVN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QW43_PIG UniProtKB/TrEMBL
  A0A8D0QX49_PIG UniProtKB/TrEMBL
  A0A8D0W330_PIG UniProtKB/TrEMBL
  A0A8D1AMB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FH58_PIG UniProtKB/TrEMBL
  A0A8D1FK33_PIG UniProtKB/TrEMBL
  F1SUX3_PIG UniProtKB/TrEMBL
UniProt Secondary A0A481BE94 UniProtKB/TrEMBL
  A0A5G2QTI9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-06-04 LRRC51  leucine rich repeat containing 51  LRRC51  leucine-rich repeat-containing protein 51  Symbol and/or name change 5135510 APPROVED