AFF1 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 8 | 131,728,873 - 131,924,819 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 131,728,819 - 131,924,814 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 141,000,099 - 141,105,435 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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AFF1 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 4 | 86,935,011 - 87,141,039 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 86,934,237 - 87,141,073 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 4 | 87,856,163 - 88,062,191 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 88,147,177 - 88,281,215 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 4 | 88,285,318 - 88,419,369 | NCBI | | | | | Celera | 4 | 85,145,587 - 85,351,225 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q21.3-q22.1 | NCBI | | | | | HuRef | 4 | 83,600,862 - 83,808,030 (+) | NCBI | | HuRef | | | CHM1_1 | 4 | 87,833,687 - 88,039,595 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 90,264,015 - 90,470,100 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Aff1 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 5 | 103,840,307 - 104,003,188 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 103,840,240 - 104,003,188 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 5 | 103,692,362 - 103,855,322 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 103,692,374 - 103,855,322 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 5 | 104,183,181 - 104,284,341 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 104,023,426 - 104,091,425 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 101,059,857 - 101,161,382 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | E5 | NCBI | | | | | cM Map | 5 | 50.45 | NCBI | | | | |
|
Aff1 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 14 | 6,165,864 - 6,328,848 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 14 | 6,169,562 - 6,328,879 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 14 | 5,861,188 - 6,024,196 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 5,863,961 - 6,024,729 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 14 | 5,832,479 - 5,931,188 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 7,132,711 - 7,231,419 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 5,830,707 - 5,929,568 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Dahl_SR_JrHsd | 14 | 5,842,943 - 5,941,686 (-) | NCBI | | Dahl_SR_JrHsd | | | Lyon_Normotensive | 14 | 5,841,760 - 5,940,493 (-) | NCBI | | Lyon_Normotensive | | | Lyon_Hypertensive | 14 | 5,840,857 - 5,939,595 (-) | NCBI | | Lyon_Hypertensive | | | F344_StmMcwi | 14 | 6,082,127 - 6,181,060 (-) | NCBI | | F344_StmMcwi | | | Rnor_6.0 | 14 | 7,222,883 - 7,384,916 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 7,226,586 - 7,384,876 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 7,212,805 - 7,353,561 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 14 | 7,015,191 - 7,114,671 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 14 | 6,003,631 - 6,102,711 (-) | NCBI | | Celera | | | RGSC_v3.1 | 14 | 7,004,997 - 7,155,484 (-) | NCBI | | | | | Cytogenetic Map | 14 | p22 | NCBI | | | | |
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Aff1 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955474 | 2,751,809 - 2,896,311 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955474 | 2,748,438 - 2,899,094 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
AFF1 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 3 | 84,910,830 - 85,168,476 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 85,172,840 - 85,438,437 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 79,197,196 - 79,443,485 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 89,968,502 - 90,171,478 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 89,969,675 - 90,166,160 (+) | Ensembl | | | panPan2 | panpan1.1 |
|
AFF1 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 32 | 10,430,159 - 10,631,305 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 32 | 10,430,090 - 10,632,172 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 32 | 31,326,682 - 31,523,790 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 32 | 10,453,888 - 10,679,293 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 32 | 10,453,810 - 10,678,879 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 32 | 10,564,467 - 10,761,370 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 32 | 10,391,189 - 10,588,764 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 32 | 29,366,225 - 29,563,373 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Aff1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
AFF1 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 7 | 35,309,172 - 35,516,777 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 35,380,578 - 35,511,446 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666037 | 14,000,731 - 14,207,897 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Aff1 (Heterocephalus glaber - naked mole-rat) |
|
Aff1 (Rattus rattus - black rat) |
|