ITGB1BP2 (integrin subunit beta 1 binding protein 2) - Rat Genome Database

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Pathways
Gene: ITGB1BP2 (integrin subunit beta 1 binding protein 2) Sus scrofa
Analyze
Symbol: ITGB1BP2
Name: integrin subunit beta 1 binding protein 2
RGD ID: 13890732
Description: ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN integrin-mediated signaling pathway (inferred); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN Z disc (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: integrin beta-1-binding protein 2; melusin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,316,471 - 57,325,096 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X57,316,490 - 57,321,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Z disc  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
ITGB1BP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,316,471 - 57,325,096 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X57,316,490 - 57,321,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ITGB1BP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,301,750 - 71,305,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,301,747 - 71,305,371 (+)Ensemblhg38GRCh38
GRCh37X70,521,600 - 70,525,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,438,353 - 70,441,929 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X70,304,648 - 70,308,225NCBI
CeleraX70,875,506 - 70,879,082 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX64,337,919 - 64,341,495 (+)NCBIHuRef
CHM1_1X70,414,681 - 70,418,257 (+)NCBICHM1_1
T2T-CHM13v2.0X69,735,860 - 69,739,481 (+)NCBIT2T-CHM13v2.0
Itgb1bp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,492,694 - 100,520,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,492,694 - 100,497,147 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X101,449,088 - 101,466,122 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,449,088 - 101,453,541 (+)Ensemblmm10GRCm38
MGSCv37X98,644,448 - 98,648,880 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X97,651,884 - 97,656,498 (+)NCBIMGSCv36mm8
CeleraX88,366,894 - 88,371,326 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX44.17NCBI
Itgb1bp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,612,118 - 70,617,158 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX70,612,521 - 70,617,158 (+)EnsemblGRCr8
mRatBN7.2X66,572,537 - 66,577,174 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,572,537 - 66,577,174 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX68,055,878 - 68,060,519 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,556,287 - 71,560,932 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X69,117,186 - 69,121,831 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X71,342,770 - 71,347,623 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX71,342,775 - 71,347,619 (+)Ensemblrn6Rnor6.0
Rnor_5.0X72,193,462 - 72,198,315 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X89,520,700 - 89,525,600 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX66,928,207 - 66,932,844 (+)NCBICelera
Cytogenetic MapXq22NCBI
Itgb1bp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,854,270 - 10,858,636 (+)Ensembl
ChiLan1.0NW_00495547510,854,148 - 10,858,802 (+)NCBIChiLan1.0ChiLan1.0
ITGB1BP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X70,974,360 - 70,978,179 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X70,977,720 - 70,981,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,564,946 - 60,569,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,620,027 - 70,624,138 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,620,025 - 70,624,138 (+)EnsemblpanPan2panpan1.1
ITGB1BP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,632,566 - 55,652,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX55,633,060 - 55,636,868 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX46,459,421 - 46,479,596 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,601,297 - 56,621,805 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX56,601,734 - 56,605,538 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X54,568,927 - 54,589,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,900,649 - 55,921,163 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,828,059 - 55,848,566 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Itgb1bp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,555,881 - 46,560,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762318,055 - 321,843 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936762318,055 - 322,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGB1BP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X61,112,400 - 61,117,566 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX61,113,673 - 61,118,040 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660652,963,649 - 2,968,066 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itgb1bp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249031,584,519 - 1,588,617 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249031,583,796 - 1,588,778 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Itgb1bp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X59,093,869 - 59,098,990 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in ITGB1BP2
54 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 22 3 2 5 14 12 22 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000028651   ⟹   ENSSSCP00000023164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX57,316,490 - 57,321,607 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000106686   ⟹   ENSSSCP00000079531
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX57,316,471 - 57,325,096 (+)Ensembl
RefSeq Acc Id: NM_001033009   ⟹   NP_001028181
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X57,316,579 - 57,321,613 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079567   ⟹   XP_020935226
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X57,316,490 - 57,321,614 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028181 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935226 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAY57557 (Get FASTA)   NCBI Sequence Viewer  
  ACQ90241 (Get FASTA)   NCBI Sequence Viewer  
  ACR78150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000023164
GenBank Protein Q462R2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020935226   ⟸   XM_021079567
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BAB5 (UniProtKB/TrEMBL),   I3LGH0 (UniProtKB/TrEMBL),   D2D3R3 (UniProtKB/TrEMBL),   A0A8D0S3I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001028181   ⟸   NM_001033009
- UniProtKB: Q462R2 (UniProtKB/Swiss-Prot),   D2D3R3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000023164   ⟸   ENSSSCT00000028651
Ensembl Acc Id: ENSSSCP00000079531   ⟸   ENSSSCT00000106686
Protein Domains
CHORD   CS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022209 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000028651 ENTREZGENE
Gene3D-CATH 2.60.40.790 UniProtKB/Swiss-Prot
  4.10.1130.20 UniProtKB/Swiss-Prot
InterPro CHORD_dom UniProtKB/Swiss-Prot
  CHRD1 UniProtKB/Swiss-Prot
  CS_dom UniProtKB/Swiss-Prot
  HSP20-like_chaperone UniProtKB/Swiss-Prot
KEGG Report ssc:613129 UniProtKB/Swiss-Prot
NCBI Gene ITGB1BP2 ENTREZGENE
PANTHER CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  ZGC:92429 UniProtKB/Swiss-Prot
Pfam CHORD UniProtKB/Swiss-Prot
  PF04969 UniProtKB/Swiss-Prot
PROSITE CHORD UniProtKB/Swiss-Prot
  PS51203 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49764 UniProtKB/Swiss-Prot
UniProt A0A8D0S3I3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CDV7_PIG UniProtKB/TrEMBL
  A0A8D1PTE1_PIG UniProtKB/TrEMBL
  A0A8D2BAB5 ENTREZGENE
  A0A8W4FJY1_PIG UniProtKB/TrEMBL
  D2D3R3 ENTREZGENE, UniProtKB/TrEMBL
  I3LGH0 ENTREZGENE, UniProtKB/TrEMBL
  ITBP2_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:98053 ENTREZGENE