Cage1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 17 | 26,995,671 - 27,033,740 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 26,789,975 - 26,828,210 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 17 | 26,790,033 - 26,828,204 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 17 | 26,648,409 - 26,686,457 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 28,251,984 - 28,290,032 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 26,597,076 - 26,635,089 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 27,452,506 - 27,490,853 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 27,452,638 - 27,490,851 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 29,366,735 - 29,405,096 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 33,017,106 - 33,056,422 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 17 | 33,019,946 - 33,059,261 (+) | NCBI | | | | | Celera | 17 | 26,421,950 - 26,459,931 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | p12 | NCBI | | | | |
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CAGE1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 6 | 7,326,659 - 7,389,742 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 7,326,656 - 7,389,742 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 7,326,892 - 7,389,975 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 7,271,886 - 7,334,941 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 6 | 8,556,649 - 8,619,686 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | p24.3 | NCBI | | | | | HuRef | 6 | 7,203,216 - 7,267,047 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 7,328,983 - 7,392,053 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 7,195,720 - 7,258,781 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Cage1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 13 | 38,190,028 - 38,221,115 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 38,190,028 - 38,221,045 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 38,006,052 - 38,037,131 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 38,006,052 - 38,037,069 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 38,097,921 - 38,128,806 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 38,013,521 - 38,039,944 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 39,127,657 - 39,158,544 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | A3.3 | NCBI | | | | | cM Map | 13 | 17.88 | NCBI | | | | |
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Cage1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955465 | 6,506,552 - 6,539,079 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955465 | 6,506,177 - 6,539,094 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CAGE1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 5 | 21,968,056 - 22,031,210 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 17,964,983 - 18,028,176 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 7,166,107 - 7,228,999 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 7,433,201 - 7,496,386 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 7,432,488 - 7,493,384 (-) | Ensembl | panpan1.1 | | panPan2 | |
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CAGE1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 35 | 7,327,865 - 7,355,116 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 35 | 7,317,567 - 7,355,026 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 35 | 7,331,146 - 7,358,386 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 35 | 7,409,582 - 7,436,825 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 35 | 7,262,748 - 7,289,988 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 35 | 7,289,661 - 7,316,879 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 35 | 8,622,019 - 8,649,253 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Cage1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404946 | 16,951,355 - 16,992,760 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936534 | 5,220,854 - 5,258,272 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936534 | 5,220,568 - 5,253,531 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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CAGE1 (Sus scrofa - pig) |
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CAGE1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 17 | 64,805,121 - 64,865,276 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 64,807,607 - 64,865,079 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 7,286,279 - 7,344,805 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Cage1 (Heterocephalus glaber - naked mole-rat) |
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