Cage1 (cancer antigen 1) - Rat Genome Database

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Gene: Cage1 (cancer antigen 1) Heterocephalus glaber
Analyze
Symbol: Cage1
Name: cancer antigen 1
RGD ID: 18905875
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cancer-associated gene 1 protein; cancer-associated gene 1 protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,186,385 - 18,216,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475618,186,037 - 18,224,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Cage1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475618,186,385 - 18,216,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475618,186,037 - 18,224,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CAGE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3867,326,659 - 7,389,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl67,326,656 - 7,389,742 (-)EnsemblGRCh38hg38GRCh38
GRCh3767,326,892 - 7,389,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3667,271,886 - 7,334,941 (-)NCBINCBI36Build 36hg18NCBI36
Celera68,556,649 - 8,619,686 (-)NCBICelera
Cytogenetic Map6p24.3NCBI
HuRef67,203,216 - 7,267,047 (-)NCBIHuRef
CHM1_167,328,983 - 7,392,053 (-)NCBICHM1_1
T2T-CHM13v2.067,195,720 - 7,258,781 (-)NCBIT2T-CHM13v2.0
Cage1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391338,190,028 - 38,221,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1338,190,028 - 38,221,045 (-)EnsemblGRCm39 Ensembl
GRCm381338,006,052 - 38,037,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1338,006,052 - 38,037,069 (-)EnsemblGRCm38mm10GRCm38
MGSCv371338,097,921 - 38,128,806 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361338,013,521 - 38,039,944 (-)NCBIMGSCv36mm8
Celera1339,127,657 - 39,158,544 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1317.88NCBI
Cage1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81726,995,671 - 27,033,740 (+)NCBIGRCr8
mRatBN7.21726,789,975 - 26,828,210 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1726,790,033 - 26,828,204 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1726,648,409 - 26,686,457 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01728,251,984 - 28,290,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01726,597,076 - 26,635,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01727,452,506 - 27,490,853 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1727,452,638 - 27,490,851 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01729,366,735 - 29,405,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41733,017,106 - 33,056,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11733,019,946 - 33,059,261 (+)NCBI
Celera1726,421,950 - 26,459,931 (+)NCBICelera
Cytogenetic Map17p12NCBI
Cage1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554656,506,552 - 6,539,079 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554656,506,177 - 6,539,094 (+)NCBIChiLan1.0ChiLan1.0
CAGE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2521,968,056 - 22,031,210 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1617,964,983 - 18,028,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v067,166,107 - 7,228,999 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.167,433,201 - 7,496,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl67,432,488 - 7,493,384 (-)Ensemblpanpan1.1panPan2
CAGE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,327,865 - 7,355,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,317,567 - 7,355,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha357,331,146 - 7,358,386 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,409,582 - 7,436,825 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1357,262,748 - 7,289,988 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,289,661 - 7,316,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,622,019 - 8,649,253 (-)NCBIUU_Cfam_GSD_1.0
Cage1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494616,951,355 - 16,992,760 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365345,220,854 - 5,258,272 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365345,220,568 - 5,253,531 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAGE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl74,707,760 - 4,750,673 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.174,692,098 - 4,750,680 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CAGE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11764,805,121 - 64,865,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1764,807,607 - 64,865,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660447,286,279 - 7,344,805 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012778   ⟹   ENSHGLP00000012641
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475618,186,385 - 18,216,795 (+)Ensembl
RefSeq Acc Id: XM_021260684   ⟹   XP_021116343
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,037 - 18,224,296 (+)NCBI
RefSeq Acc Id: XM_021260685   ⟹   XP_021116344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,111 - 18,224,296 (+)NCBI
RefSeq Acc Id: XM_021260686   ⟹   XP_021116345
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,037 - 18,224,782 (+)NCBI
RefSeq Acc Id: XM_021260687   ⟹   XP_021116346
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,112 - 18,224,780 (+)NCBI
RefSeq Acc Id: XM_021260688   ⟹   XP_021116347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,106 - 18,224,296 (+)NCBI
RefSeq Acc Id: XM_021260689   ⟹   XP_021116348
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,113 - 18,216,725 (+)NCBI
RefSeq Acc Id: XM_021260690   ⟹   XP_021116349
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,122 - 18,216,725 (+)NCBI
RefSeq Acc Id: XM_021260691   ⟹   XP_021116350
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,131 - 18,201,828 (+)NCBI
RefSeq Acc Id: XM_021260692   ⟹   XP_021116351
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475618,186,037 - 18,224,296 (+)NCBI
RefSeq Acc Id: XP_021116345   ⟸   XM_021260686
- Peptide Label: isoform X3
- UniProtKB: A0AAX6T5Z3 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116343   ⟸   XM_021260684
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T5X8 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116351   ⟸   XM_021260692
- Peptide Label: isoform X9
- UniProtKB: A0AAX6T4W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116347   ⟸   XM_021260688
- Peptide Label: isoform X5
- UniProtKB: A0AAX6T8V8 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116344   ⟸   XM_021260685
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T6B4 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116346   ⟸   XM_021260687
- Peptide Label: isoform X4
- UniProtKB: A0AAX6T7E2 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116348   ⟸   XM_021260689
- Peptide Label: isoform X6
- UniProtKB: A0AAX6T7C8 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116349   ⟸   XM_021260690
- Peptide Label: isoform X7
- UniProtKB: A0AAX6T4J7 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116350   ⟸   XM_021260691
- Peptide Label: isoform X8
- UniProtKB: A0AAX6T958 (UniProtKB/TrEMBL),   G5BAT2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012641   ⟸   ENSHGLT00000012778


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009035 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012778 ENTREZGENE
InterPro CAGE1 UniProtKB/TrEMBL
  CAGE1_homolog UniProtKB/TrEMBL
NCBI Gene Cage1 ENTREZGENE
PANTHER CANCER-ASSOCIATED GENE 1 PROTEIN UniProtKB/TrEMBL
  CANCER-ASSOCIATED GENE 1 PROTEIN UniProtKB/TrEMBL
Pfam CAGE1 UniProtKB/TrEMBL
UniProt A0AAX6T4J7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T4W6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T5X8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T5Z3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T6B4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T7C8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T7E2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T8V8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T958 ENTREZGENE, UniProtKB/TrEMBL
  G5BAT2 ENTREZGENE, UniProtKB/TrEMBL