Anks3 (ankyrin repeat and sterile alpha motif domain containing 3) - Rat Genome Database

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Gene: Anks3 (ankyrin repeat and sterile alpha motif domain containing 3) Rattus norvegicus
Analyze
Symbol: Anks3
Name: ankyrin repeat and sterile alpha motif domain containing 3
RGD ID: 1305833
Description: Predicted to be located in cytoplasm. Predicted to be active in cilium. Orthologous to human ANKS3 (ankyrin repeat and sterile alpha motif domain containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and SAM domain-containing protein 3; LOC302937; MGC94228; RGD1305833; similar to RIKEN cDNA 2700067D09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,121,504 - 11,142,261 (+)NCBIGRCr8
mRatBN7.21010,614,953 - 10,635,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,615,047 - 10,635,806 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,323,559 - 15,344,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,812,376 - 14,833,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,481,506 - 10,502,164 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,808,780 - 10,829,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,808,823 - 10,831,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,575,611 - 9,596,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,732,109 - 10,752,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,732,108 - 10,752,776 (+)NCBI
Celera109,579,341 - 9,600,010 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IBA,ISO)
cytoplasm  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:26188091   PMID:26327442   PMID:29395339  


Genomics

Comparative Map Data
Anks3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,121,504 - 11,142,261 (+)NCBIGRCr8
mRatBN7.21010,614,953 - 10,635,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,615,047 - 10,635,806 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,323,559 - 15,344,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,812,376 - 14,833,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,481,506 - 10,502,164 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,808,780 - 10,829,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,808,823 - 10,831,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,575,611 - 9,596,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,732,109 - 10,752,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,732,108 - 10,752,776 (+)NCBI
Celera109,579,341 - 9,600,010 (+)NCBICelera
Cytogenetic Map10q12NCBI
ANKS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,696,511 - 4,734,271 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,696,510 - 4,734,378 (-)EnsemblGRCh38hg38GRCh38
GRCh37164,746,512 - 4,784,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,686,514 - 4,724,164 (-)NCBINCBI36Build 36hg18NCBI36
Celera164,955,291 - 4,992,944 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,713,030 - 4,750,906 (-)NCBIHuRef
CHM1_1164,747,292 - 4,785,140 (-)NCBICHM1_1
T2T-CHM13v2.0164,725,963 - 4,763,728 (-)NCBIT2T-CHM13v2.0
Anks3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,759,290 - 4,783,362 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,759,300 - 4,782,069 (-)EnsemblGRCm39 Ensembl
GRCm38164,941,415 - 4,965,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,941,436 - 4,964,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,941,420 - 4,964,330 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,856,671 - 4,879,505 (-)NCBIMGSCv36mm8
Celera165,572,755 - 5,595,570 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.48NCBI
Anks3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,752,008 - 12,775,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,752,468 - 12,775,081 (+)NCBIChiLan1.0ChiLan1.0
ANKS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,225,222 - 5,263,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,015,351 - 9,053,705 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,621,185 - 3,659,570 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,788,093 - 4,822,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,788,093 - 4,820,760 (-)Ensemblpanpan1.1panPan2
ANKS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,678,916 - 36,711,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,669,590 - 36,710,807 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0636,882,187 - 36,914,161 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl636,882,347 - 36,914,158 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,676,333 - 36,708,012 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,569,127 - 36,600,861 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,971,269 - 37,003,540 (+)NCBIUU_Cfam_GSD_1.0
Anks3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,852,793 - 106,878,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365304,695,401 - 4,722,924 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365304,698,234 - 4,723,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,650,256 - 37,689,500 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,664,182 - 37,689,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,725,118 - 38,748,113 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,378,318 - 4,413,266 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,375,517 - 4,413,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,248,878 - 26,286,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anks3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,478,608 - 2,505,257 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,478,608 - 2,507,287 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Anks3
69 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:149
Interacting mature miRNAs:165
Transcripts:ENSRNOT00000004298
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat

Markers in Region
BM384744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,632,503 - 10,632,688 (+)MAPPERmRatBN7.2
Rnor_6.01010,826,196 - 10,826,380NCBIRnor6.0
Rnor_5.0109,593,126 - 9,593,310UniSTSRnor5.0
RGSC_v3.41010,749,482 - 10,749,666UniSTSRGSC3.4
Celera109,596,714 - 9,596,898UniSTS
RH 3.4 Map10100.23UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000004298   ⟹   ENSRNOP00000004298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1010,615,093 - 10,635,806 (+)Ensembl
Rnor_6.0 Ensembl1010,808,823 - 10,829,490 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077347   ⟹   ENSRNOP00000070091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1010,615,047 - 10,635,800 (+)Ensembl
Rnor_6.0 Ensembl1010,811,937 - 10,831,535 (+)Ensembl
RefSeq Acc Id: NM_001009676   ⟹   NP_001009676
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,561 - 11,142,261 (+)NCBI
mRatBN7.21010,615,107 - 10,635,809 (+)NCBI
Rnor_6.01010,808,823 - 10,829,492 (+)NCBI
Rnor_5.0109,575,611 - 9,596,437 (+)NCBI
RGSC_v3.41010,732,109 - 10,752,778 (+)RGD
Celera109,579,341 - 9,600,010 (+)RGD
Sequence:
RefSeq Acc Id: NM_001414337   ⟹   NP_001401266
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,561 - 11,142,261 (+)NCBI
mRatBN7.21010,615,107 - 10,635,809 (+)NCBI
RefSeq Acc Id: XM_006245788   ⟹   XP_006245850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,142,252 (+)NCBI
mRatBN7.21010,615,050 - 10,635,815 (+)NCBI
Rnor_6.01010,808,780 - 10,829,507 (+)NCBI
Rnor_5.0109,575,611 - 9,596,437 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245790   ⟹   XP_006245852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,124,728 - 11,142,252 (+)NCBI
mRatBN7.21010,618,276 - 10,635,815 (+)NCBI
Rnor_6.01010,812,018 - 10,829,507 (+)NCBI
Rnor_5.0109,575,611 - 9,596,437 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767484   ⟹   XP_008765706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,124,727 - 11,142,252 (+)NCBI
mRatBN7.21010,618,276 - 10,635,815 (+)NCBI
Rnor_6.01010,812,018 - 10,829,507 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085842   ⟹   XP_038941770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,569 - 11,142,252 (+)NCBI
mRatBN7.21010,614,953 - 10,635,815 (+)NCBI
RefSeq Acc Id: XM_039085843   ⟹   XP_038941771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,127,593 - 11,142,252 (+)NCBI
mRatBN7.21010,621,226 - 10,635,815 (+)NCBI
RefSeq Acc Id: XM_063268896   ⟹   XP_063124966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,142,252 (+)NCBI
RefSeq Acc Id: XM_063268897   ⟹   XP_063124967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,141,928 (+)NCBI
RefSeq Acc Id: XR_005489786
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,141,928 (+)NCBI
mRatBN7.21010,615,050 - 10,635,815 (+)NCBI
RefSeq Acc Id: XR_005489787
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,141,928 (+)NCBI
mRatBN7.21010,615,050 - 10,635,487 (+)NCBI
RefSeq Acc Id: XR_005489788
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,121,504 - 11,138,033 (+)NCBI
mRatBN7.21010,615,050 - 10,634,969 (+)NCBI
RefSeq Acc Id: NP_001009676   ⟸   NM_001009676
- Peptide Label: isoform 1
- UniProtKB: Q5M9H0 (UniProtKB/Swiss-Prot),   A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245850   ⟸   XM_006245788
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245852   ⟸   XM_006245790
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JX10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765706   ⟸   XM_008767484
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSRNOP00000004298   ⟸   ENSRNOT00000004298
Ensembl Acc Id: ENSRNOP00000070091   ⟸   ENSRNOT00000077347
RefSeq Acc Id: XP_038941770   ⟸   XM_039085842
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038941771   ⟸   XM_039085843
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001401266   ⟸   NM_001414337
- Peptide Label: isoform 2
- UniProtKB: A6K4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124966   ⟸   XM_063268896
- Peptide Label: isoform X2
- UniProtKB: A6K4Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124967   ⟸   XM_063268897
- Peptide Label: isoform X4
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M9H0-F1-model_v2 AlphaFold Q5M9H0 1-663 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696968
Promoter ID:EPDNEW_R7493
Type:multiple initiation site
Name:Anks3_1
Description:ankyrin repeat and sterile alpha motif domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01010,808,801 - 10,808,861EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305833 AgrOrtholog
BioCyc Gene G2FUF-26050 BioCyc
Ensembl Genes ENSRNOG00000003186 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055028242 UniProtKB/Swiss-Prot
  ENSRNOG00060007335 UniProtKB/Swiss-Prot
  ENSRNOG00065010105 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004298.7 UniProtKB/Swiss-Prot
  ENSRNOT00000077347.2 UniProtKB/TrEMBL
  ENSRNOT00055048888 UniProtKB/Swiss-Prot
  ENSRNOT00060012071 UniProtKB/Swiss-Prot
  ENSRNOT00065016273 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131099 IMAGE-MGC_LOAD
InterPro ANKS3_SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:302937 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94228 IMAGE-MGC_LOAD
NCBI Gene 302937 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SI:CH211-189E2.2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Anks3 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003186 RatGTEx
  ENSRNOG00055028242 RatGTEx
  ENSRNOG00060007335 RatGTEx
  ENSRNOG00065010105 RatGTEx
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JX10 ENTREZGENE, UniProtKB/TrEMBL
  A6K4Q3 ENTREZGENE, UniProtKB/TrEMBL
  ANKS3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Anks3  ankyrin repeat and sterile alpha motif domain containing 3  RGD1305833  similar to RIKEN cDNA 2700067D09  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1305833  similar to RIKEN cDNA 2700067D09  RGD1305833_predicted  similar to RIKEN cDNA 2700067D09 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1305833_predicted  similar to RIKEN cDNA 2700067D09 (predicted)  LOC302937_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC302937_predicted  similar to RIKEN cDNA 2700067D09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL