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Gene: Cmtm7 (CKLF like MARVEL transmembrane domain containing 7) Ictidomys tridecemlineatus

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Symbol:

Cmtm7

Name:

CKLF like MARVEL transmembrane domain containing 7

RGD ID:

12654345

Description:

INVOLVED IN B cell activation (ortholog); B-1a B cell differentiation (ortholog); gene expression (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CKLF-like MARVEL transmembrane domain-containing protein 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	189,798,491 - 189,808,681 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	22,937,056 - 22,947,381 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	22,932,965 - 22,947,309 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell activation (ISO)

B-1a B cell differentiation (ISO)

gene expression (ISO)

inflammatory response to antigenic stimulus (ISO)

plasma cell differentiation (ISO)

positive regulation of p38MAPK cascade (ISO)

protein phosphorylation (ISO)

toll-like receptor signaling pathway (ISO)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cmtm7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	189,798,491 - 189,808,681 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	22,937,056 - 22,947,381 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	22,932,965 - 22,947,309 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CMTM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	32,391,853 - 32,455,528 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	32,391,686 - 32,483,067 (+)	Ensembl			hg38	GRCh38
GRCh37	3	32,433,345 - 32,497,020 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	32,408,167 - 32,471,337 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	32,408,166 - 32,471,337	NCBI
Celera	3	32,370,594 - 32,433,419 (+)	NCBI		Celera
Cytogenetic Map	3	p22.3	NCBI
HuRef	3	32,368,696 - 32,431,820 (+)	NCBI		HuRef
CHM1_1	3	32,383,146 - 32,446,330 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	32,388,830 - 32,452,466 (+)	NCBI		T2T-CHM13v2.0

Cmtm7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	114,585,904 - 114,611,061 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	114,585,904 - 114,610,924 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	114,756,836 - 114,781,993 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	114,756,836 - 114,781,856 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	114,665,954 - 114,690,947 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	114,605,534 - 114,630,527 (-)	NCBI		MGSCv36	mm8
Celera	9	115,232,130 - 115,257,424 (-)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	65.13	NCBI

Cmtm7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	123,326,233 - 123,353,148 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	123,325,975 - 123,353,148 (-)	Ensembl				GRCr8
mRatBN7.2	8	114,448,037 - 114,474,958 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	114,448,042 - 114,474,621 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	120,065,256 - 120,092,224 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	118,264,493 - 118,291,459 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	116,107,340 - 116,134,310 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	8	124,215,086 - 124,242,050 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	8	126,319,346 - 126,346,292 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	8	124,803,880 - 124,830,846 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	8	116,212,098 - 116,239,064 (-)	NCBI		F344_StmMcwi
Rnor_6.0	8	122,814,563 - 122,841,479 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	122,812,459 - 122,841,477 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	122,126,648 - 122,153,564 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	119,175,165 - 119,202,081 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	113,694,951 - 113,721,844 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Cmtm7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	23,752,919 - 23,807,141 (+)	Ensembl
ChiLan1.0	NW_004955430	23,752,910 - 23,803,754 (+)	NCBI	ChiLan1.0	ChiLan1.0

CMTM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	32,366,245 - 32,432,252 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	32,373,547 - 32,437,019 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	32,308,975 - 32,372,711 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	32,624,258 - 32,687,245 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

CMTM7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	12,317,636 - 12,382,836 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	12,328,303 - 12,382,837 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	12,292,218 - 12,357,621 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	12,608,527 - 12,674,013 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	12,619,421 - 12,674,012 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	12,409,876 - 12,475,201 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	12,551,996 - 12,617,616 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	12,557,185 - 12,630,035 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CMTM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	18,412,215 - 18,424,122 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	18,371,327 - 18,424,132 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	20,399,737 - 20,411,233 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CMTM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	76,896,216 - 76,960,117 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	50,250,298 - 50,314,312 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cmtm7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	10,477,355 - 10,523,596 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624788	10,477,476 - 10,523,506 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cmtm7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	105,362,320 - 105,393,692 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013361197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078038229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012595 ⟹ ENSSTOP00000011287

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	22,937,106 - 22,946,546 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000035110 ⟹ ENSSTOP00000025887

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936473	22,937,056 - 22,947,381 (+)	Ensembl

RefSeq Acc Id:

XM_013361197 ⟹ XP_013216651

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	189,798,491 - 189,808,681 (+)	NCBI
SpeTri2.0	NW_004936473	22,932,965 - 22,947,309 (+)	NCBI

Sequence:

show sequence

ATGGCATCCGGCAGTGTGTGCCCACCTGAGTGTGGCAAAGACTGGCTTGGCTCTGAAGTCTCTC
AGGTCACTCTGCTGATCGCCTTCATCTGTGTGCGGAGCTCCGTGTGGATCGACTACAGTGCCTT
CAGTTACTTTGAAGTCGTCACCATTTGTGACTTGATCATGATCCTGGCCTTTTACCTGGTCCAC
CTCTTCCGCTTCTACCGTGTGCTCACCTGCATCAGCTGGCCCCTGTCGGAACTTCTGCACTATG
TCATCGGTACCCTGCTCCTCCTCATTGCCTCCATCGTGGCGGCCTCCAGGAGTTACAGCCAGAG
CGGACTGGTAGCCGGAGCGATCTTTGGTTTCCTGGCTACCTTTCTGTGCTTGGCAAGCGTGTGG
CTGTCCTACAAGATCTCGTGTGTAACCCAGTCAACAGATGCAGCTGTTTGACAAGGCCTGGGTG
CCTCAAAAGGATCTGCAGGACGTGGGCCTGGCAGACAGGAGGACAAGTGACCCCAGGCACGGCT
TCTGGACTGTTCCTATGCCAAAGTCGCAAGCAGGCTAATAGACACCAGGAAGGCTCCCCTGGCC
TCCAGCTTCCCCAAGACACCAGGACTCAGCGCCTGGGCTGGCCAGAGCCTCTGTCTCCAGTCTT
CCCTGGAGAACTTTCCTCCCCTTCTGGGAAAGGAAGCAGCTCCAAGGGCAGCCTGTCTCTCCTG
CCTGCTTTTAGCAGCACCTCAGGTACTGAACTCGATGGTGGGCTCCCAGGTCTGCTTCTCCTTC
ACGTTCCTCAGGGGAGCGAAGATGCCTCAATCCTCATAAAAATAAAGCCACCTCCTAATTTATC
TAGCCTGTCAATCTGATCTTGAAGATGCCCTTAAGGTGACATGCCTGCACAAACACTAGGTGGT
CAGCCTGTTGTCTCCCTCCCTCTCCTCTCTCTGCCTTTGTTACGGTTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGCACGCTTGTGTGTTTTTAAATAAAATATTAGCCAAGTGCAGAAGACTTTCTT
ATTGAACTAGAAGAAGCCTGTAAAGCTAGGCCTTTGCCTTTGAGTTTATGTCTGGCACATGACC
CTAAACCCAGTGCTGTGTATATACTCAAATTCTCATAAAAAAAGAAGAATCTTTTTTTCTATTT
TCTACTGTTTTTTTTTTTTTCTTTTTGAGGTGGGGCAATGGCAATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_077894355	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011287.3
	ENSSTOP00000025887.1
GenBank Protein	KAG3279553	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013216651 ⟸ XM_013361197
- Sequence:	show sequence MASGSVCPPECGKDWLGSEVSQVTLLIAFICVRSSVWIDYSAFSYFEVVTICDLIMILAFYLVH LFRFYRVLTCISWPLSELLHYVIGTLLLLIASIVAASRSYSQSGLVAGAIFGFLATFLCLASVW LSYKISCVTQSTDAAV hide sequence

Ensembl Acc Id:

ENSSTOP00000011287 ⟸ ENSSTOT00000012595

Ensembl Acc Id:

ENSSTOP00000025887 ⟸ ENSSTOT00000035110

Protein Domains

MARVEL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012595	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012595.3	UniProtKB/TrEMBL
	ENSSTOT00000035110.1	UniProtKB/TrEMBL
InterPro	Marvel	UniProtKB/TrEMBL
	MARVEL-CKLF_proteins	UniProtKB/TrEMBL
NCBI Gene	Cmtm7	ENTREZGENE
PANTHER	CKLF-LIKE MARVEL TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 7	UniProtKB/TrEMBL
	MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
Pfam	MARVEL	UniProtKB/TrEMBL
PROSITE	MARVEL	UniProtKB/TrEMBL
UniProt	A0A287CX56_ICTTR	UniProtKB/TrEMBL
	I3MJG2_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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