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Gene: Gal3st1 (galactose-3-O-sulfotransferase 1) Ictidomys tridecemlineatus

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Symbol:

Gal3st1

Name:

galactose-3-O-sulfotransferase 1

RGD ID:

12642912

Description:

ENCODES a protein that exhibits galactose 3-O-sulfotransferase activity (inferred); galactosylceramide sulfotransferase activity (inferred); sulfotransferase activity (inferred); INVOLVED IN galactosylceramide biosynthetic process (ortholog); myelination (ortholog); spermatogenesis (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN Golgi membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

galactosylceramide sulfotransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	116,575,603 - 116,591,774 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936904	142,387 - 159,633 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936904	142,576 - 158,606 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

galactosylceramide biosynthetic process (IEA,ISO)

galactosylceramide metabolic process (IEA)

glycerolipid metabolic process (IEA)

glycolipid biosynthetic process (IEA)

myelination (IEA,ISO)

spermatogenesis (ISO)

sphingolipid metabolic process (IEA)

Cellular Component

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

galactose 3-O-sulfotransferase activity (IEA)

galactosylceramide sulfotransferase activity (IEA)

sulfotransferase activity (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Fabry disease pathway (ISO)

Gaucher's disease pathway (ISO)

Krabbe disease pathway (ISO)

metachromatic leukodystrophy pathway (ISO)

sphingolipid metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Gal3st1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	116,575,603 - 116,591,774 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936904	142,387 - 159,633 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936904	142,576 - 158,606 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GAL3ST1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	30,554,635 - 30,574,665 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	30,554,632 - 30,576,210 (-)	Ensembl			hg38	GRCh38
GRCh37	22	30,950,622 - 30,970,652 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	29,280,624 - 29,290,876 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	29,275,177 - 29,285,430	NCBI
Celera	22	14,750,340 - 14,760,591 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	13,912,757 - 13,922,983 (-)	NCBI		HuRef
CHM1_1	22	30,910,038 - 30,920,288 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	31,018,042 - 31,038,069 (-)	NCBI		T2T-CHM13v2.0

Gal3st1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	3,933,636 - 3,949,328 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	3,933,636 - 3,949,326 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	3,983,636 - 3,999,328 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	3,983,636 - 3,999,326 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	3,883,639 - 3,899,331 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	3,883,716 - 3,899,318 (+)	NCBI		MGSCv36	mm8
Celera	11	4,478,907 - 4,494,599 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	2.81	NCBI

Gal3st1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	83,094,265 - 83,109,992 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	83,094,385 - 83,109,978 (+)	Ensembl				GRCr8
mRatBN7.2	14	78,868,049 - 78,886,402 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	78,870,793 - 78,886,388 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	83,311,631 - 83,327,086 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	84,551,717 - 84,567,170 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	80,997,444 - 81,012,973 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	83,629,368 - 83,644,957 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	82,254,373 - 82,269,960 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	83,776,870 - 83,792,463 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	82,687,800 - 82,703,255 (+)	NCBI		F344_StmMcwi
Rnor_6.0	14	84,231,473 - 84,247,371 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	84,231,639 - 84,247,369 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	84,915,288 - 84,929,677 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	84,636,490 - 84,642,269 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	77,782,762 - 77,798,192 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Gal3st1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	4,771,346 - 4,784,142 (-)	Ensembl
ChiLan1.0	NW_004955455	4,771,378 - 4,794,085 (-)	NCBI	ChiLan1.0	ChiLan1.0

GAL3ST1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	40,514,111 - 40,534,088 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	43,212,593 - 43,232,610 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	11,582,915 - 11,602,936 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	29,382,779 - 29,403,310 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	29,382,779 - 29,393,042 (-)	Ensembl			panPan2	panpan1.1

GAL3ST1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	23,634,884 - 23,654,205 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	23,637,844 - 23,646,219 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	23,508,876 - 23,510,937 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	24,021,806 - 24,038,366 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	23,965,175 - 24,030,406 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	23,723,595 - 23,725,656 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	23,986,212 - 23,988,273 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	24,046,756 - 24,048,817 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

GAL3ST1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	47,457,787 - 47,476,455 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	47,455,089 - 47,476,459 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	50,539,757 - 50,578,316 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GAL3ST1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	13,431,245 - 13,451,189 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	13,431,270 - 13,434,055 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	112,682,070 - 112,705,045 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gal3st1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004625705	2,469 - 4,916 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004625705	1,409 - 4,810 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gal3st1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	72,985,938 - 73,001,687 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005341872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078039610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078039611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000013933 ⟹ ENSSTOP00000012484

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936904	142,387 - 159,633 (+)	Ensembl

RefSeq Acc Id:

XM_005341872 ⟹ XP_005341929

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	116,575,603 - 116,591,774 (-)	NCBI
SpeTri2.0	NW_004936904	142,576 - 158,606 (+)	NCBI

Sequence:

show sequence

TGAGTGCCCGGGCTGGCGATCCAGCCACTCCGAGTCCGAGGAGGACTGGGACAAGGTGTCTGAG
ATGCCGCCCACACTACAGAAGAAGCGCTGGGAGTCCATGGCCAAGGGGTTGGTTCTGGGAGCTC
TTTTTACCAGCTTCCTGCTGCTATTGTACTCCTATGCTATGCCCCCACTGCACACTGGCCTGAC
CTCCACGACCCCCGATGCCATAGCACCCTGCTCCCCAGTCTCTGGTGAGTCAGAGGGGGTGATT
CTGGCCAATGGCTCATTTAGAGGTTGCCAGCCCCGGCGCAACATCGTGTTCATGAAGACTCACA
AGACGGCCAGCAGCACGCTGCTCAACATCCTGTTCCGCTTTGGTCAGAAGCACGGGCTCAAATT
CGCCTTCCCCAATGGTCGCAACGACTTCGATTACCCGGCCTTCTTCACCCGCAGCCTGGTGCAG
GACTACCGGCCCGGGGCCTGCTTCAACATCATCTGCAACCACATGCGCTTCCACTATGAGGAGG
TGCGCGGCCTGGTGCCACCCAACGCCACTTTCATCACCGTGCTCCGGGACCCTGCCCGCCTTTT
CGAGTCCTCCTTCCACTACTTTGGACCCGTGGTGCCCCTCACGTGGAAGCTCTCAAGCAGCGAC
AAGCTGGCGGAATTCTTGCAGGACCCAGATCGCTACTACGACCCCAACGGCTACAACGCCCACT
ACCTCCGCAACTTGCTCTTCTTCGATCTGGGCTATGACAGTGGCCTGGACCCTGACAGCCCGCA
GGTGCAGGAGCACATACTGGAGGTGGAGCGCCGCTTCCACCTGGTGCTCCTCCAGGAGTACTTC
GATGAGTCTCTGGTGCTGCTGAAGGATCTGCTCTGCTGGGAGCTGGAGGACGTGCTGTACTTCA
AACTCAACGCCCGTCGTGATTCACCAGTGCCTCGGCTCTCTGGGGACCTTTACCGCCGTGCCAC
AGCCTGGAACATGCTGGATGCCCGCCTCTACCGCCACTTCAATGCCAGCTTCTGGCGCAAAGTG
GAGGCCTTTGGGCGGGAGCGTATGGCCCAAGAGGTGGCTGCCCTGCGCCGTGCCAATGAGCGCA
TGCGGCGTATCTGCATTGATGGTGGTCGGGCAGTGGATGCGGCTGCCATCCAGGACTCAGCCAT
GCAGCCCTGGCAGCCGCTGGGTTCCAAGTCCATCCTTGGTTACAACCTCAAGAAGAGCATCGGG
CAGCGACACCAACAGCTCTGCCGTCGGATGCTCACGCCCGAGATCCAGTATCTGATGGATCTTG
GCGTTAACCTCTGGGTCACCAAGCTCTGGAAGTTCATTAGGGACTTTCTGCGGTGGTGACATCC
TGCTGACCTGTGACCTCCCAGCTCATTCACTACAGAGGGGCTGGGCAGGGACCTGCTGATGTTG
GCTTCCTTCAGCCCCTCCTGGTGCCACCCTGGACCCCAGGGTGAGGAGAGGCTCTCAAGGGGAT
GTAGCCAACCAGAACTGGGCCCCTGGTACACAGGGCCTCACAGGAGAGCAGTATTTGACTAATT
ATACTATTTTTTATTAAACCCTCTACCCTCTATTTCCTGCCTCCCCTTAAAGGGGAGACCTCAG
AAGTAAAAGGA

hide sequence

RefSeq Acc Id:

XM_040292024 ⟹ XP_040147958

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	116,575,603 - 116,591,717 (-)	NCBI

RefSeq Acc Id:

XM_040292025 ⟹ XP_040147959

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	116,575,603 - 116,584,079 (-)	NCBI

RefSeq Acc Id:

XM_040292026 ⟹ XP_040147960

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	116,575,603 - 116,583,622 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005341929	(Get FASTA)	NCBI Sequence Viewer
	XP_040147959	(Get FASTA)	NCBI Sequence Viewer
	XP_040147960	(Get FASTA)	NCBI Sequence Viewer
	XP_077895736	(Get FASTA)	NCBI Sequence Viewer
	XP_077895737	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012484.3
	ENSSTOP00015017806
GenBank Protein	KAG3278408	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005341929 ⟸ XM_005341872

- UniProtKB:

I3MLY8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPPTLQKKRWESMAKGLVLGALFTSFLLLLYSYAMPPLHTGLTSTTPDAIAPCSPVSGESEGVI
LANGSFRGCQPRRNIVFMKTHKTASSTLLNILFRFGQKHGLKFAFPNGRNDFDYPAFFTRSLVQ
DYRPGACFNIICNHMRFHYEEVRGLVPPNATFITVLRDPARLFESSFHYFGPVVPLTWKLSSSD
KLAEFLQDPDRYYDPNGYNAHYLRNLLFFDLGYDSGLDPDSPQVQEHILEVERRFHLVLLQEYF
DESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGDLYRRATAWNMLDARLYRHFNASFWRKV
EAFGRERMAQEVAALRRANERMRRICIDGGRAVDAAAIQDSAMQPWQPLGSKSILGYNLKKSIG
QRHQQLCRRMLTPEIQYLMDLGVNLWVTKLWKFIRDFLRW

hide sequence

RefSeq Acc Id:

XP_040147958 ⟸ XM_040292024

RefSeq Acc Id:	XP_040147959 ⟸ XM_040292025
- UniProtKB:	I3MLY8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040147960 ⟸ XM_040292026
- UniProtKB:	I3MLY8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000012484 ⟸ ENSSTOT00000013933

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013935	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015014556	ENTREZGENE
Ensembl Transcript	ENSSTOT00000013933.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Gal-3-0_sulfotransfrase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	iti:101971891	UniProtKB/TrEMBL
NCBI Gene	Gal3st1	ENTREZGENE
PANTHER	GALACTOSYLCERAMIDE SULFOTRANSFERASE	UniProtKB/TrEMBL
	PTHR14647	UniProtKB/TrEMBL
Pfam	Gal-3-0_sulfotr	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3MLY8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

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Imported Disease Annotations - CTD

Imported Annotations - SMPDB