Gal3st1 (galactose-3-O-sulfotransferase 1) - Rat Genome Database

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Gene: Gal3st1 (galactose-3-O-sulfotransferase 1) Mus musculus
Analyze
Symbol: Gal3st1
Name: galactose-3-O-sulfotransferase 1
RGD ID: 1620070
MGI Page MGI
Description: Enables galactosylceramide sulfotransferase activity. Involved in galactosylceramide metabolic process. Acts upstream of or within galactosylceramide biosynthetic process; myelination; and spermatogenesis. Predicted to be located in membrane. Is expressed in brain; future spinal cord; heart ventricle; and spinal cord cervical region. Orthologous to human GAL3ST1 (galactose-3-O-sulfotransferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3'-phosphoadenosine-5'-phosphosulfate:Galcer sulfotransferase; 3'-phosphoadenylylsulfate-galactosylceramide 3'-sulfotransferase; cerebroside sulfotransferase; Cs; CST; galactosylceramide sulfotransferase; Galcer sulfotransferase; Gcs; Gcst
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm9056  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,933,636 - 3,949,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,933,636 - 3,949,326 (+)EnsemblGRCm39 Ensembl
GRCm38113,983,636 - 3,999,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,983,636 - 3,999,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,883,639 - 3,899,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,883,716 - 3,899,318 (+)NCBIMGSCv36mm8
Celera114,478,907 - 4,494,599 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9030544   PMID:10349636   PMID:10727929   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11917099   PMID:12151530   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479  
PMID:14715942   PMID:14730700   PMID:15048850   PMID:15056697   PMID:15489334   PMID:15659616   PMID:16141072   PMID:16141073   PMID:16288467   PMID:17299768   PMID:17658888   PMID:17883393  
PMID:18996356   PMID:19224580   PMID:19582739   PMID:19878436   PMID:20231363   PMID:20506478   PMID:21267068   PMID:21785259   PMID:21873635   PMID:22499158   PMID:23300814   PMID:23322453  
PMID:23716689   PMID:24395133   PMID:25274613   PMID:27861899   PMID:28373486   PMID:30025158   PMID:30446529   PMID:34526055   PMID:37283058  


Genomics

Comparative Map Data
Gal3st1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,933,636 - 3,949,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,933,636 - 3,949,326 (+)EnsemblGRCm39 Ensembl
GRCm38113,983,636 - 3,999,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,983,636 - 3,999,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,883,639 - 3,899,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,883,716 - 3,899,318 (+)NCBIMGSCv36mm8
Celera114,478,907 - 4,494,599 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.81NCBI
GAL3ST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,554,635 - 30,574,665 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,554,635 - 30,574,665 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,950,622 - 30,970,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,280,624 - 29,290,876 (-)NCBINCBI36Build 36hg18NCBI36
Build 342229,275,177 - 29,285,430NCBI
Celera2214,750,340 - 14,760,591 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,912,757 - 13,922,983 (-)NCBIHuRef
CHM1_12230,910,038 - 30,920,288 (-)NCBICHM1_1
T2T-CHM13v2.02231,018,042 - 31,038,069 (-)NCBIT2T-CHM13v2.0
Gal3st1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,094,265 - 83,109,992 (+)NCBIGRCr8
mRatBN7.21478,868,049 - 78,886,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,870,793 - 78,886,388 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,311,631 - 83,327,086 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,551,717 - 84,567,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,997,444 - 81,012,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,231,473 - 84,247,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,231,639 - 84,247,369 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,915,288 - 84,929,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,636,490 - 84,642,269 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1477,782,762 - 77,798,192 (+)NCBICelera
Cytogenetic Map14q21NCBI
Gal3st1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,771,346 - 4,784,142 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,771,378 - 4,794,085 (-)NCBIChiLan1.0ChiLan1.0
GAL3ST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,514,111 - 40,534,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,212,593 - 43,232,610 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,582,915 - 11,602,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,382,779 - 29,403,310 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,382,779 - 29,393,042 (-)Ensemblpanpan1.1panPan2
GAL3ST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,634,884 - 23,654,205 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,637,844 - 23,646,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,508,876 - 23,510,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,021,806 - 24,038,366 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,965,175 - 24,030,406 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12623,723,595 - 23,725,656 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,986,212 - 23,988,273 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,046,756 - 24,048,817 (-)NCBIUU_Cfam_GSD_1.0
Gal3st1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,575,603 - 116,591,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936904142,387 - 159,633 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936904142,576 - 158,606 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAL3ST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,457,787 - 47,476,455 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,455,089 - 47,476,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,539,757 - 50,578,316 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAL3ST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,431,245 - 13,451,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,431,270 - 13,434,055 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,682,070 - 112,705,045 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gal3st1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046257052,469 - 4,916 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046257051,409 - 4,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gal3st1
448 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:458
Count of miRNA genes:145
Interacting mature miRNAs:154
Transcripts:ENSMUST00000063004, ENSMUST00000078757, ENSMUST00000109981
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
Gal3st1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38113,996,992 - 3,998,180UniSTSGRCm38
MGSCv37113,896,995 - 3,898,183UniSTSGRCm37
Celera114,492,263 - 4,493,451UniSTS
Cytogenetic Map11A1UniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB804195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX239940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000063004   ⟹   ENSMUSP00000058348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,933,713 - 3,949,315 (+)Ensembl
GRCm38.p6 Ensembl113,983,713 - 3,999,315 (+)Ensembl
RefSeq Acc Id: ENSMUST00000078757   ⟹   ENSMUSP00000077815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,933,636 - 3,949,326 (+)Ensembl
GRCm38.p6 Ensembl113,983,636 - 3,999,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109981   ⟹   ENSMUSP00000105608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,939,933 - 3,949,308 (+)Ensembl
GRCm38.p6 Ensembl113,989,933 - 3,999,308 (+)Ensembl
RefSeq Acc Id: NM_001177691   ⟹   NP_001171162
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,939,933 - 3,949,328 (+)NCBI
GRCm38113,989,933 - 3,999,328 (+)NCBI
MGSCv37113,883,639 - 3,899,331 (+)RGD
Celera114,478,907 - 4,494,599 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177703   ⟹   NP_001171174
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,933,636 - 3,949,328 (+)NCBI
GRCm38113,983,636 - 3,999,328 (+)ENTREZGENE
MGSCv37113,883,639 - 3,899,331 (+)RGD
Celera114,478,907 - 4,494,599 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001382290   ⟹   NP_001369219
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,933,651 - 3,949,326 (+)NCBI
GRCm38113,983,651 - 3,999,326 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001382291   ⟹   NP_001369220
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,933,651 - 3,949,326 (+)NCBI
GRCm38113,983,651 - 3,999,326 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016922   ⟹   NP_058618
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,933,636 - 3,949,328 (+)NCBI
GRCm38113,983,636 - 3,999,328 (+)ENTREZGENE
MGSCv37113,883,639 - 3,899,331 (+)RGD
Celera114,478,907 - 4,494,599 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514756   ⟹   XP_006514819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,942,530 - 3,949,326 (+)NCBI
GRCm38113,992,524 - 3,999,326 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514757   ⟹   XP_006514820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,940,909 - 3,949,326 (+)NCBI
GRCm38113,990,906 - 3,999,326 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156850   ⟹   XP_036012743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,934,510 - 3,949,326 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_058618   ⟸   NM_016922
- UniProtKB: Q9D8V6 (UniProtKB/Swiss-Prot),   Q9JHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171174   ⟸   NM_001177703
- UniProtKB: Q9D8V6 (UniProtKB/Swiss-Prot),   Q9JHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171162   ⟸   NM_001177691
- UniProtKB: Q9D8V6 (UniProtKB/Swiss-Prot),   Q9JHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514820   ⟸   XM_006514757
- Peptide Label: isoform X1
- UniProtKB: Q9D8V6 (UniProtKB/Swiss-Prot),   Q9JHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514819   ⟸   XM_006514756
- Peptide Label: isoform X1
- UniProtKB: Q9D8V6 (UniProtKB/Swiss-Prot),   Q9JHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001369220   ⟸   NM_001382291
- UniProtKB: Q9JHE4 (UniProtKB/Swiss-Prot),   Q9D8V6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369219   ⟸   NM_001382290
- UniProtKB: Q9JHE4 (UniProtKB/Swiss-Prot),   Q9D8V6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000105608   ⟸   ENSMUST00000109981
RefSeq Acc Id: ENSMUSP00000077815   ⟸   ENSMUST00000078757
RefSeq Acc Id: ENSMUSP00000058348   ⟸   ENSMUST00000063004
RefSeq Acc Id: XP_036012743   ⟸   XM_036156850
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHE4-F1-model_v2 AlphaFold Q9JHE4 1-423 view protein structure

Promoters
RGD ID:6820916
Promoter ID:MM_KWN:6202
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung
Transcripts:ENSMUST00000078757,   OTTMUST00000011237
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36113,883,581 - 3,884,082 (+)MPROMDB
RGD ID:6820915
Promoter ID:MM_KWN:6203
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC007HUD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36113,889,781 - 3,890,281 (+)MPROMDB
RGD ID:8673764
Promoter ID:EPDNEW_M14913
Type:initiation region
Name:Gal3st1_1
Description:Mus musculus galactose-3-O-sulfotransferase 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14914  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38113,983,687 - 3,983,747EPDNEW
RGD ID:8673766
Promoter ID:EPDNEW_M14914
Type:multiple initiation site
Name:Gal3st1_2
Description:Mus musculus galactose-3-O-sulfotransferase 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14913  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38113,989,937 - 3,989,997EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858277 AgrOrtholog
Ensembl Genes ENSMUSG00000049721 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063004 ENTREZGENE
  ENSMUST00000063004.14 UniProtKB/Swiss-Prot
  ENSMUST00000078757 ENTREZGENE
  ENSMUST00000078757.8 UniProtKB/Swiss-Prot
  ENSMUST00000109981 ENTREZGENE
  ENSMUST00000109981.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro Gal-3-0_sulfotransfrase UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:53897 UniProtKB/Swiss-Prot
MGD MGI:1858277 ENTREZGENE
NCBI Gene 53897 ENTREZGENE
PANTHER GALACTOSYLCERAMIDE SULFOTRANSFERASE UniProtKB/Swiss-Prot
  PTHR14647 UniProtKB/Swiss-Prot
Pfam Gal-3-0_sulfotr UniProtKB/Swiss-Prot
PhenoGen Gal3st1 PhenoGen
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt G3ST1_MOUSE UniProtKB/Swiss-Prot
  Q9D8V6 ENTREZGENE
  Q9JHE4 ENTREZGENE
UniProt Secondary Q9D8V6 UniProtKB/Swiss-Prot