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Gene: Atp6v0d1 (ATPase H+ transporting V0 subunit d1) Ictidomys tridecemlineatus

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Symbol:

Atp6v0d1

Name:

ATPase H+ transporting V0 subunit d1

RGD ID:

12502533

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cellular response to increased oxygen levels (inferred); homeostatic process (inferred); intracellular iron ion homeostasis (inferred); ASSOCIATED WITH cardiomyopathy (ortholog); lipodystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); axon terminus (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

V-type proton ATPase subunit d 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,661,672 - 41,700,328 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,886,371 - 17,927,557 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	17,888,788 - 17,927,513 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

lipodystrophy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to increased oxygen levels (IEA)

homeostatic process (IEA)

intracellular iron ion homeostasis (IEA)

monoatomic ion transport (IEA)

proton transmembrane transport (IEA)

synaptic vesicle lumen acidification (IEA)

Cellular Component

apical plasma membrane (ISO)

axon terminus (ISO)

centrosome (IEA)

clathrin-coated vesicle membrane (IEA)

early endosome (IEA)

lysosomal membrane (IEA)

membrane (IEA)

presynapse (IEA)

protein-containing complex (ISO)

proton-transporting V-type ATPase complex (IEA)

proton-transporting V-type ATPase, V0 domain (IEA)

synaptic vesicle (ISO)

synaptic vesicle membrane (ISO)

vacuolar proton-transporting V-type ATPase complex (IEA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

proton transmembrane transporter activity (IEA)

proton-transporting ATPase activity, rotational mechanism (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Atp6v0d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,661,672 - 41,700,328 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,886,371 - 17,927,557 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	17,888,788 - 17,927,513 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6V0D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,438,019 - 67,481,157 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,438,005 - 67,481,188 (-)	Ensembl			hg38	GRCh38
GRCh37	16	67,471,922 - 67,515,060 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,029,418 - 66,072,590 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	66,029,425 - 66,072,589	NCBI
Celera	16	51,980,121 - 52,023,291 (-)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,345,066 - 53,388,217 (-)	NCBI		HuRef
CHM1_1	16	68,879,298 - 68,922,471 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,232,795 - 73,275,929 (-)	NCBI		T2T-CHM13v2.0

Atp6v0d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,251,093 - 106,292,696 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,251,097 - 106,292,679 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	105,524,461 - 105,566,064 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,524,465 - 105,566,047 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	108,048,370 - 108,089,940 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,413,599 - 108,455,169 (-)	NCBI		MGSCv36	mm8
Celera	8	109,747,720 - 109,789,272 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Atp6v0d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,313,268 - 50,357,248 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,313,273 - 50,357,395 (-)	Ensembl				GRCr8
mRatBN7.2	19	33,403,352 - 33,447,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,403,355 - 33,447,450 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,218,940 - 40,262,920 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,872,276 - 40,916,256 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,169,948 - 43,214,030 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	19	44,100,559 - 44,144,538 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	19	42,225,420 - 42,269,398 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	19	44,098,734 - 44,142,716 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	19	41,857,731 - 41,901,714 (-)	NCBI		F344_StmMcwi
Rnor_6.0	19	37,481,782 - 37,525,762 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,481,782 - 37,525,762 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,347,540 - 48,391,661 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,342,041 - 35,386,025 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	32,831,706 - 32,875,649 (-)	NCBI		Celera
RGSC_v3.1	19	35,346,923 - 35,390,906 (-)	NCBI
Cytogenetic Map	19	q12	NCBI

Atp6v0d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,167,439 - 9,206,193 (+)	Ensembl
ChiLan1.0	NW_004955484	9,167,439 - 9,206,193 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP6V0D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	76,967,580 - 77,010,506 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	82,880,224 - 82,923,123 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	47,783,327 - 47,826,138 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,171,883 - 67,214,670 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,171,883 - 67,214,670 (-)	Ensembl			panPan2	panpan1.1

ATP6V0D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,926,589 - 81,965,959 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,926,612 - 81,965,526 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,916,255 - 81,955,624 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,361,885 - 82,401,257 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,361,853 - 82,401,254 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,188,035 - 82,227,401 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,869,135 - 81,908,503 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,512,585 - 82,551,949 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

ATP6V0D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,090,183 - 28,131,985 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	28,090,180 - 28,132,080 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,357,269 - 25,399,102 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP6V0D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,976,118 - 60,018,414 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	60,002,544 - 60,017,894 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	22,725,086 - 22,767,799 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp6v0d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,828,024 - 18,883,128 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	18,828,025 - 18,883,128 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp6v0d1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	25,252,474 - 25,297,073 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005318319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000016450 ⟹ ENSSTOP00000014723

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	17,886,371 - 17,927,557 (-)	Ensembl

RefSeq Acc Id:

XM_005318319 ⟹ XP_005318376

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	41,661,672 - 41,700,328 (+)	NCBI
SpeTri2.0	NW_004936475	17,888,788 - 17,927,513 (-)	NCBI

Sequence:

show sequence

GGAAACCACCCGGAAGCCGGGCGCCCTCAGAGTCCTGCCCTATTGTGGTCACGTGAGGTCTTGC
ACGTCACCTGACGCTCTTGACAGCCCTTTGCGGGCGCCGCGTCAGCTGATCTTGTAGTTGCGTT
GTGTGCCGGCCGGTCGGGGCTCTCTGGTCCCGCCGACCCCGCCGCAGCCATGTCGTTCTTCCCA
GAGCTTTACTTCAACGTGGATAATGGCTACTTGGAAGGACTGGTGCGCGGCCTGAAGGCCGGGG
TGCTCAGCCAGGCGGACTACCTCAACCTGGTGCAGTGCGAGACTCTCGAGGACTTGAAATTGCA
CCTGCAGAGCACAGACTATGGCAACTTCCTGGCCAATGAGGCATCGCCTCTGACAGTGTCAGTC
ATTGATGACCGGCTCAAGGAGAAGATGGTGGTAGAGTTCCGCCATATGAGGAACCACGCCTATG
AGCCACTTGCCAGCTTCCTGGACTTCATTACTTACAGTTACATGATTGACAATGTGATCCTGCT
CATCACCGGTACACTGCACCAGCGCTCCATTGCTGAGCTTGTGCCCAAGTGCCACCCACTAGGC
AGCTTCGAGCAGATGGAGGCCGTGAACATCGCACAGACACCTGCTGAGCTCTACAATGCCATTC
TGGTGGACACACCCCTGGCGGCTTTTTTCCAGGACTGCATCTCAGAGCAGGATCTTGATGAGAT
GAACATCGAGATTATCCGCAATACACTCTACAAGGCCTACTTGGAGTCCTTTTACAAGTTCTGC
ACCTTACTGGGCGGGACCACAGCTGATGCCATGTGCCCCATTCTGGAGTTTGAAGCAGACCGCC
GCGCCTTCATCATCACCATCAATTCTTTTGGCACAGAGCTGTCCAAGGAGGACCGTGCCAAGCT
CTTCCCGCACTGCGGGCGCCTCTACCCTGAGGGCTTGGCTCAGCTGGCTAGGGCTGATGACTAT
GAGCAGGTCAAGAACGTGGCCGATTACTACCCAGAATACAAACTGCTTTTTGAGGGTGCAGGAA
GCAACCCTGGAGACAAGACCCTAGAGGACCGATTCTTCGAGCATGAGGTGAAGCTGAACAAGTT
GGCCTTCTTGAACCAGTTCCACTTTGGTGTCTTCTATGCTTTTGTGAAGCTCAAGGAGCAGGAG
TGTCGCAACATTGTGTGGATTGCTGAGTGTATTGCCCAGCGCCACCGCGCCAAGATCGACAATT
ACATCCCTATCTTCTAGCATCCTGACCCAAAGCTCCTAAGTGCAAATGTGTATATCTGTGTGTG
CTGTGACAAAACCCATGGCTCACCTGCCTGCCCTGGGGGCAGGTAGCACATTGTCCTAGGGGCT
ACCCAGCTTTATTGACTCCCTCTGGGACTGCTTTCAGGCCTGAAAAGGGGCTGGGCACCTCCCT
CCTAACCAAGAATGGACCAAGACCCCCTCCAGAGCAATGAGGTCCTCTCAACCCTATGTTTACA
GCTACTGACATGTCTGAGAAGCATGTAGTCACTTTCATGCCCCTTCCTAACCTGAGAACCTGTG
GGAGCAGTGTGAGCCTGAGGGTCACTCCCATAGTCATGGAAAGGATAGAGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTATGTGTCCCTGGGGCATGGAGGAAGTAGCTCTGCCCCTCTGAGACAATA
AAACTGCCCTCTTTAAGTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005318376	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014723.2
	ENSSTOP00015006716
GenBank Protein	KAG3257040	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005318376 ⟸ XM_005318319

- UniProtKB:

I3MRJ9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASP
LTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPK
CHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLES
FYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLA
RADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVK
LKEQECRNIVWIAECIAQRHRAKIDNYIPIF

hide sequence

Ensembl Acc Id:

ENSSTOP00000014723 ⟸ ENSSTOT00000016450

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000016447	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015005520	ENTREZGENE
Ensembl Transcript	ENSSTOT00000016450.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.132.50	UniProtKB/TrEMBL
	1.20.1690.10	UniProtKB/TrEMBL
InterPro	ATPase_su_c/d_sf	UniProtKB/TrEMBL
	ATPase_V0-cplx_csu/dsu	UniProtKB/TrEMBL
	ATPase_V0-cplx_dsu	UniProtKB/TrEMBL
	V-type_ATPase_su_c/d_dom_3	UniProtKB/TrEMBL
	V-type_ATPase_suC/d	UniProtKB/TrEMBL
KEGG Report	iti:101957956	UniProtKB/TrEMBL
NCBI Gene	Atp6v0d1	ENTREZGENE
PANTHER	PTHR11028	UniProtKB/TrEMBL
Pfam	vATP-synt_AC39	UniProtKB/TrEMBL
PIRSF	V-ATP_synth_D	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103486	UniProtKB/TrEMBL
UniProt	I3MRJ9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI