B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) - Rat Genome Database

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Pathways
Gene: B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) Ictidomys tridecemlineatus
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Symbol: B3gnt5
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
RGD ID: 12489920
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity (inferred); INVOLVED IN central nervous system development (inferred); glycoprotein biosynthetic process (inferred); protein O-linked glycosylation (inferred); FOUND IN Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, transcript variant X1; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936566273,714 - 274,847 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936566271,807 - 289,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IEA)
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3gnt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936566273,714 - 274,847 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936566271,807 - 289,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,253,253 - 183,273,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,249,324 - 183,298,504 (+)Ensemblhg38GRCh38
GRCh373182,971,041 - 182,991,173 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,453,726 - 184,473,873 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343184,453,746 - 184,473,880NCBI
Celera3181,406,353 - 181,426,501 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3180,376,825 - 180,396,839 (+)NCBIHuRef
CHM1_13182,934,723 - 182,954,870 (+)NCBICHM1_1
T2T-CHM13v2.03186,060,144 - 186,080,277 (+)NCBIT2T-CHM13v2.0
B3gnt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,578,943 - 19,591,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1619,578,958 - 19,591,503 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381619,760,192 - 19,772,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,760,208 - 19,772,753 (+)Ensemblmm10GRCm38
MGSCv371619,760,327 - 19,772,846 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361619,673,797 - 19,685,863 (+)NCBIMGSCv36mm8
Celera1620,328,624 - 20,341,086 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.23NCBI
B3gnt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,645,480 - 94,657,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,645,480 - 94,660,514 (-)EnsemblGRCr8
mRatBN7.21181,141,102 - 81,153,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,140,599 - 81,156,166 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1189,878,457 - 89,890,574 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,531,822 - 82,543,939 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,592,958 - 81,605,075 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1196,518,549 - 96,530,666 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1194,714,415 - 94,726,532 (-)NCBILyon_Normotensive
Lyon_Hypertensive1195,639,163 - 95,651,280 (-)NCBILyon_Hypertensive
F344_StmMcwi1194,444,369 - 94,456,486 (-)NCBIF344_StmMcwi
Rnor_6.01184,919,055 - 84,931,160 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,919,066 - 84,931,160 (-)Ensemblrn6Rnor6.0
Rnor_5.01187,978,737 - 87,990,865 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,396,028 - 83,408,584 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,975,786 - 79,987,947 (-)NCBICelera
RGSC_v3.11183,456,455 - 83,457,193 (-)NCBI
Cytogenetic Map11q23NCBI
B3gnt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,046,485 - 24,047,624 (-)Ensembl
ChiLan1.0NW_00495542024,029,867 - 24,061,801 (-)NCBIChiLan1.0ChiLan1.0
B3GNT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22181,119,574 - 181,143,675 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13181,124,288 - 181,148,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03180,283,491 - 180,307,583 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13188,458,434 - 188,477,816 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,474,226 - 188,475,362 (+)EnsemblpanPan2panpan1.1
B3GNT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,208,518 - 16,228,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3416,225,002 - 16,226,147 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3420,297,025 - 20,317,113 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03416,116,036 - 16,136,260 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13416,157,034 - 16,177,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03416,140,415 - 16,161,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03416,380,447 - 16,400,540 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B3GNT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13121,206,550 - 121,223,922 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113121,205,070 - 121,222,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,477,285 - 130,494,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q23-q41NCBI
B3GNT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,131,905 - 6,151,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,134,356 - 6,135,489 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606314,936,081 - 14,959,281 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,152,728 - 73,153,867 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473073,122,977 - 73,167,713 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
B3gnt5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v144,631,797 - 4,635,628 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010394   ⟹   ENSSTOP00000016556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936566273,714 - 274,847 (-)Ensembl
RefSeq Acc Id: XM_021729797   ⟹   XP_021585472
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBI
SpeTri2.0NW_004936566271,807 - 289,526 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270144   ⟹   XP_040126078
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021585472 (Get FASTA)   NCBI Sequence Viewer  
  XP_040126078 (Get FASTA)   NCBI Sequence Viewer  
  XP_077899867 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016556.2
  ENSSTOP00015004764
GenBank Protein KAG3271084 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271085 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021585472   ⟸   XM_021729797
- UniProtKB: I3MWR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126078   ⟸   XM_040270144
- UniProtKB: I3MWR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000016556   ⟸   ENSSTOT00000010394


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010399 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00015003988 ENTREZGENE
Ensembl Transcript ENSSTOT00000010394.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3gnt5 ENTREZGENE
PANTHER LACTOSYLCERAMIDE 1,3-N-ACETYL-BETA-D-GLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt I3MWR1 ENTREZGENE, UniProtKB/TrEMBL