B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) - Rat Genome Database

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Gene: B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) Heterocephalus glaber
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Symbol: B3gnt5
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
RGD ID: 18915156
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity (inferred); INVOLVED IN central nervous system development (ortholog); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,152,728 - 73,153,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,122,977 - 73,167,713 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3gnt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,152,728 - 73,153,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,122,977 - 73,167,713 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
B3GNT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,253,253 - 183,273,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,253,253 - 183,298,504 (+)EnsemblGRCh38hg38GRCh38
GRCh373182,971,041 - 182,991,173 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,453,726 - 184,473,873 (+)NCBINCBI36Build 36hg18NCBI36
Build 343184,453,746 - 184,473,880NCBI
Celera3181,406,353 - 181,426,501 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3180,376,825 - 180,396,839 (+)NCBIHuRef
CHM1_13182,934,723 - 182,954,870 (+)NCBICHM1_1
T2T-CHM13v2.03186,060,144 - 186,080,277 (+)NCBIT2T-CHM13v2.0
B3gnt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,578,943 - 19,591,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1619,578,958 - 19,591,503 (+)EnsemblGRCm39 Ensembl
GRCm381619,760,192 - 19,772,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,760,208 - 19,772,753 (+)EnsemblGRCm38mm10GRCm38
MGSCv371619,760,327 - 19,772,846 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361619,673,797 - 19,685,863 (+)NCBIMGSCv36mm8
Celera1620,328,624 - 20,341,086 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.23NCBI
B3gnt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,645,480 - 94,657,584 (-)NCBIGRCr8
mRatBN7.21181,141,102 - 81,153,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,140,599 - 81,156,166 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,878,457 - 89,890,574 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,531,822 - 82,543,939 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,592,958 - 81,605,075 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,919,055 - 84,931,160 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,919,066 - 84,931,160 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,978,737 - 87,990,865 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41183,396,028 - 83,408,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11183,456,455 - 83,457,193 (-)NCBI
Celera1179,975,786 - 79,987,947 (-)NCBICelera
Cytogenetic Map11q23NCBI
B3gnt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,046,485 - 24,047,624 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,029,867 - 24,061,801 (-)NCBIChiLan1.0ChiLan1.0
B3GNT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22181,119,574 - 181,143,675 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13181,124,288 - 181,148,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03180,283,491 - 180,307,583 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13188,458,434 - 188,477,816 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,474,226 - 188,475,362 (+)Ensemblpanpan1.1panPan2
B3GNT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,208,518 - 16,228,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3416,225,002 - 16,226,147 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3420,297,025 - 20,317,113 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03416,116,036 - 16,136,260 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13416,157,034 - 16,177,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03416,140,415 - 16,161,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03416,380,447 - 16,400,540 (+)NCBIUU_Cfam_GSD_1.0
B3gnt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936566273,714 - 274,847 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936566271,807 - 289,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13121,206,550 - 121,223,922 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113121,205,070 - 121,222,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,477,285 - 130,494,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q23-q41NCBI
B3GNT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,131,905 - 6,151,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,134,356 - 6,135,489 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606314,936,081 - 14,959,281 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000029521   ⟹   ENSHGLP00000028897
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473073,152,728 - 73,153,867 (-)Ensembl
RefSeq Acc Id: XM_004834922   ⟹   XP_004834979
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,150,254 - 73,167,695 (-)NCBI
RefSeq Acc Id: XM_021256464   ⟹   XP_021112123
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,150,254 - 73,167,695 (-)NCBI
RefSeq Acc Id: XR_001183520
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,124,538 - 73,167,700 (-)NCBI
RefSeq Acc Id: XR_002394180
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,122,977 - 73,167,696 (-)NCBI
RefSeq Acc Id: XR_002394181
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,122,977 - 73,167,705 (-)NCBI
RefSeq Acc Id: XR_002394182
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,124,538 - 73,167,713 (-)NCBI
RefSeq Acc Id: XR_002394183
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,124,538 - 73,167,713 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834979 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028897
  ENSHGLP00100029879
  ENSHGLP00100030245
  ENSHGLP00100031312
  ENSHGLP00100034942
  ENSHGLP00100042605
  ENSHGLP00100045291
GenBank Protein JAO00991 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004834979   ⟸   XM_004834922
- UniProtKB: A0AAX6NQZ2 (UniProtKB/TrEMBL),   A0A0P6JCF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112123   ⟸   XM_021256464
- UniProtKB: A0AAX6NQZ2 (UniProtKB/TrEMBL),   A0A0P6JCF5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028897   ⟸   ENSHGLT00000029521


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000021311 Ensembl, ENTREZGENE
  ENSHGLG00100048592 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000029521 ENTREZGENE
  ENSHGLT00100046878 UniProtKB/TrEMBL
  ENSHGLT00100051220 UniProtKB/TrEMBL
  ENSHGLT00100057392 UniProtKB/TrEMBL
  ENSHGLT00100073786 UniProtKB/TrEMBL
  ENSHGLT00100077872 UniProtKB/TrEMBL
  ENSHGLT00100078618 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3gnt5 ENTREZGENE
PANTHER LACTOSYLCERAMIDE 1,3-N-ACETYL-BETA-D-GLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A0P6JCF5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6NQZ2 ENTREZGENE, UniProtKB/TrEMBL