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Gene: Bmerb1 (bMERB domain containing 1) Ictidomys tridecemlineatus

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Symbol:

Bmerb1

Name:

bMERB domain containing 1

RGD ID:

12462295

Description:

INVOLVED IN negative regulation of cell motility involved in cerebral cortex radial glia guided migration (ortholog); negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Familial Thoracic Aortic Aneurysm 4 (ortholog); FOUND IN microtubule cytoskeleton (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

bMERB domain-containing protein 1; chromosome unknown C16orf45 homolog; chromosome unknown open reading frame, human C16orf45; CUNH16orf45; LOC101962667; uncharacterized protein C16orf45 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	114,965,996 - 115,045,025 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	3,063,617 - 3,143,028 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	3,063,861 - 3,142,680 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Familial Thoracic Aortic Aneurysm 4 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell motility involved in cerebral cortex radial glia guided migration (ISO)

negative regulation of microtubule depolymerization (IEA,ISO)

Cellular Component

microtubule cytoskeleton (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Bmerb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	114,965,996 - 115,045,025 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	3,063,617 - 3,143,028 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	3,063,861 - 3,142,680 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BMERB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	15,434,588 - 15,588,259 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	15,434,475 - 15,625,028 (+)	Ensembl			hg38	GRCh38
GRCh37	16	15,528,445 - 15,682,116 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	15,435,826 - 15,589,418 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	15,435,825 - 15,589,418	NCBI
Celera	16	15,208,794 - 15,362,586 (+)	NCBI		Celera
Cytogenetic Map	16	p13.11	NCBI
HuRef	16	14,921,797 - 15,075,991 (+)	NCBI		HuRef
CHM1_1	16	15,612,671 - 15,766,478 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	15,439,375 - 15,593,064 (+)	NCBI		T2T-CHM13v2.0

Bmerb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	13,802,975 - 13,922,916 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	13,804,468 - 13,919,364 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	13,986,612 - 14,105,052 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	13,986,604 - 14,101,500 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	13,986,730 - 14,101,587 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	13,900,239 - 14,014,865 (+)	NCBI		MGSCv36	mm8
Celera	16	14,591,870 - 14,707,984 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	9.66	NCBI

Bmerb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	2,286,999 - 2,453,890 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	2,287,000 - 2,453,728 (-)	Ensembl				GRCr8
mRatBN7.2	10	1,779,834 - 1,946,586 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	1,779,835 - 1,946,575 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	6,476,673 - 6,643,420 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	33,922,423 - 34,089,180 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	1,683,266 - 1,849,924 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	5,328,743 - 5,495,483 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	5,994,420 - 6,161,141 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	7,688,689 - 7,855,443 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	7,698,322 - 7,865,062 (-)	NCBI		F344_StmMcwi
Rnor_6.0	10	3,411,380 - 3,570,689 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	3,411,380 - 3,570,688 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	2,286,728 - 2,443,753 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	72,759 - 187,515 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	824,575 - 981,223 (-)	NCBI		Celera
RGSC_v3.1	10	72,758 - 187,514 (+)	NCBI
Cytogenetic Map	10	q11	NCBI

Bmerb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	314,486 - 442,088 (+)	Ensembl
ChiLan1.0	NW_004955442	317,334 - 442,514 (+)	NCBI	ChiLan1.0	ChiLan1.0

BMERB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	15,486,464 - 15,644,479 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	19,269,638 - 19,427,230 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	15,737,496 - 15,893,578 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	15,737,850 - 15,892,145 (+)	Ensembl			panPan2	panpan1.1

BMERB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	28,242,190 - 28,356,218 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	28,225,677 - 28,357,180 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	29,588,559 - 29,719,248 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	28,388,572 - 28,518,953 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	28,404,443 - 28,518,923 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	28,191,663 - 28,322,094 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	28,081,920 - 28,212,193 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	28,487,151 - 28,617,926 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

BMERB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	7,248,827 - 7,387,518 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	7,248,806 - 7,387,523 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

BMERB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	14,434,349 - 14,600,624 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	14,434,365 - 14,600,935 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	15,440,391 - 15,607,435 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bmerb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	75,066 - 184,590 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624782	75,141 - 184,590 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bmerb1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	8,839,602 - 8,963,241 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005323693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021725419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078024314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078024315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078024316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000000620 ⟹ ENSSTOP00000000565

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	3,064,039 - 3,138,679 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000035988 ⟹ ENSSTOP00000027840

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	3,063,617 - 3,143,028 (+)	Ensembl

RefSeq Acc Id:

XM_005323693 ⟹ XP_005323750

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	114,965,999 - 115,045,025 (+)	NCBI
SpeTri2.0	NW_004936501	3,063,861 - 3,142,680 (+)	NCBI

Sequence:

show sequence

CCTCCCCCCTCCTGGGTACCAGTCGGGCGCTCCCGGGCGCTGGCGGCGGAAGAGATGGAGCCGC
GTCACGAGCGCCCGGCCCCTTAAAACGCTGCTGGCTGGAGCCGCCTCCCTCCCTGCAACCCGCG
GCGGGGATGGAGTAAAGGGGGACCCGTCGACCTGCCCGCGGGGATCCGCGATGGAGTTAAAGCA
ATCTTTATCCACCCATCTGGAAGCTGAGAAGCCTCTGAGGCGCTATGGGGCGGTGGAGGAGACA
GCATGGAAAGCGGAGGGACTGGGGAGAACCCAGCTGGACATCATCTCCATGGCGGAGACGACCA
TGATGCCCGAGGAGATCGAGCTGGAGATGGCCAAGATCCAGCGTCTCCGGGAAGTGCTCGTCCG
CCGGGAGTCTGAGCTCAGGTTCATGATGGATGACATTCAGCTCTGCAAGGACATCATGGACCTC
AAGCAGGAGCTGCAGAACTTGGTCGCCATCCCAGAAGAAGAAAAAACCAAGCTGCAGAAGCAGA
GGGAGGACGAGCTCATCCAGAAGATCCACAGACTCGTGCAGAAGAGAGACTTCCTCGTGGACGA
CGCGGAGGTGGAGCGGCTAAGGGAGCAAGAAGAAGACAAGGAAATGGCCGATTTCCTGAGAATC
AAGTTAAAACCTCTAGACAAAGTAGCCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAG
AGCCCCCACCTAGCAAGCCCACAGTGGCCAAGACTGGGCTGGCACTCATCAAGGATTGCTGCGG
GGCCACCCAGTGCAACATCATGTAGCCCCCACACGGGGTGCCCCGGAGCCACGGGGACCCCCTC
CCACCCTCTTGTCGTCGTAGCCCCCATTTCACCGGGGCCTAAGAGCTCTCCAAGGCTTCCGGAA
GGGGTTGAAGGCAAGCCTGTGACTGCCGCCAGGGGCCATGGGGCGCGGCAGGCGGGCCGGCCGC
CCTGTACAGAGTGTAGCAATAGGGAGTCCCTCACCGTCGCATGGCCCTCCCCAGAGCATGCCCA
ACCCAGGAGTCTGCCTCACCAATTATCCAACCACCAGGAAGGTCCTCCCTCAGAAAAGTTGATC
TCCACTTCTATTTAGCTGTATCTAACCCACTGTGCAAGTCATCTGGGAGAGGGGCATCGGTCCC
CAGGTGTGTATAGTTGTGACTTCTCAACAGTCTAGCACCGTGTTGGACACCTCCCCCTCCACCC
TCCCAGCTCTGCTGTCAGGCCTACCCCAAATAGGCACAGGTCCCATCCCCCGTCTGTCCTCTCC
CAGGGACCGTGCCCCCCACTGGAGGGCCCTACACGTAGCCCACGCATCTCTCAGGCACCGTCAG
TGTCACGTTCTTGGAGGCCGATGGCCTGTCTGTAAAGACTTGAGCTTGTGTGCCACGCTGTGGT
CACATCTCCTGCTTCCTCCCATCCTGTGTCCGGGCCCAGTTCACATCGGGAGGGTGTCCACTGT
GCTCTTGGCTCTTCTTTTACTTGCCATGTCTGGCCCAGGGGCACGGAGCTGAGTGGGGACAGGT
CTGGGCAGTAGCTGATCCAGTGCTTGGAAGAAAGAGGGGATCCGAGGCCAAGGCCAGGACAGAC
GGAAGGGGACCCAGAACAGACGTCGACCCAGACGCTCGTTACCCACCGGGGGCCACTGCAGGAG
TGCCAGTGGGATGTCACCACACCAGCCCAACACCCAGACCTCCATCAAGAACGCTGACAGGCGG
GAGAGACCGCGTGACCCAGCCGTGTCCCATCCTCTGGTGGCGTATTTGAACCAGCCTAACAATT
CCACCTGTCCAACTTGATGTACATTTGCTATAGCCAGCCCGGCACAGCCCGTGTGACCTCTCTG
TCCGTGTATGTGTGTCGTGACCGGCCTTAGTAGTTAGTGTAACTCAAGGTTCGCTGATGTTCCG
TCATCCATCAGAGAAAATAAAATGGAAACCACATACACCGCTTTTTAAACGCTTTAATTTTTTT
CCTTGATTATGGAAGTGATTGATGTACATAGTAAATCATTTTAAAAGTACAGAAAATATAAAGA
CCTTTTTGTTTGTTTGTT

hide sequence

RefSeq Acc Id:

XM_021725418 ⟹ XP_021581093

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	114,965,996 - 115,045,025 (+)	NCBI
SpeTri2.0	NW_004936501	3,063,879 - 3,141,408 (+)	NCBI

Sequence:

show sequence

CCAGTCGGGCGCTCCCGGGCGCTGGCGGCGGAAGAGATGGAGCCGCGTCACGAGCGCCCGGCCC
CTTAAAACGCTGCTGGCTGGAGCCGCCTCCCTCCCTGCAACCCGCGGCGGGGATGGAGTAAAGG
GGGACCCGTCGACCTGCCCGCGGGGATCCGCGATGGAGTTAAAGCAATCTTTATCCACCCATCT
GGAAGCTGAGAAGCCTCTGAGGCGCTATGGGGCGGTGGAGGAGACAGCATGGAAAGCGGAGGGA
CTGGGGAGAACCCAGCTGGACATCATCTCCATGGCGGAGACGACCATGATGCCCGAGGAGATCG
AGCTGGAGATGGCCAAGATCCAGCGTCTCCGGGAAGTGCTCGTCCGCCGGGAGTCTGAGCTCAG
GTTCATGATGGATGACATTCAGCTCTGCAAGGACATCATGGACCTCAAGCAGGAGCTGCAGAAC
TTGGTCGCCATCCCAGGCCGTGCTCTCTCCAGAGGCTTAGAGGAGAGTCTCCGTCTCTTCCACC
AACGGAAGGTCCCGGTCAGTCCTTGGCTGACAGCGGTATCACCCCAGCCTGCCTCTGACGTCTG
CTCTTCCGAGGACCCCGGTCACTGGAGGACAGAGAGTCCGCTAAGAAGAAAAAACCAAGCTGCA
GAAGCAGAGGGAGGACGAGCTCATCCAGAAGATCCACAGACTCGTGCAGAAGAGAGACTTCCTC
GTGGACGACGCGGAGGTGGAGCGGCTAAGGGAGCAAGAAGAAGACAAGGAAATGGCCGATTTCC
TGAGAATCAAGTTAAAACCTCTAGACAAAGTAGCCAAATCTCCAGCCAGCTCCCGGGCAGAGAA
GAAAGCAGAGCCCCCACCTAGCAAGCCCACAGTGGCCAAGACTGGGCTGGCACTCATCAAGGAT
TGCTGCGGGGCCACCCAGTGCAACATCATGTAGC

hide sequence

RefSeq Acc Id:

XM_021725419 ⟹ XP_021581094

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	114,965,998 - 115,045,025 (+)	NCBI
SpeTri2.0	NW_004936501	3,063,879 - 3,142,680 (+)	NCBI

Sequence:

show sequence

CCAGTCGGGCGCTCCCGGGCGCTGGCGGCGGAAGAGATGGAGCCGCGTCACGAGCGCCCGGCCC
CTTAAAACGCTGCTGGCTGGAGCCGCCTCCCTCCCTGCAACCCGCGGCGGGGATGGAGTAAAGG
GGGACCCGTCGACCTGCCCGCGGGGATCCGCGATGGAGTTAAAGCAATCTTTATCCACCCATCT
GGAAGCTGAGAAGCCTCTGAGGCGCTATGGGGCGGTGGAGGAGACAGCATGGAAAGCGGAGGGA
CTGGGGAGAACCCAGCTGGACATCATCTCCATGGCGGAGACGACCATGATGCCCGAGGAGATCG
AGCTGGAGATGGCCAAGATCCAGCGTCTCCGGGAAGTGCTCGTCCGCCGGGAGTCTGAGCTCAG
GTTCATGATGGATGACATTCAGCTCTGCAAGGACATCATGGACCTCAAGCAGGAGCTGCAGAAC
TTGGTCGCCATCCCAGAAGAAAAAACCAAGCTGCAGAAGCAGAGGGAGGACGAGCTCATCCAGA
AGATCCACAGACTCGTGCAGAAGAGAGACTTCCTCGTGGACGACGCGGAGGTGGAGCGGCTAAG
GGAGCAAGAAGAAGACAAGGAAATGGCCGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAA
GTAGCCAAATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCA
CAGTGGCCAAGACTGGGCTGGCACTCATCAAGGATTGCTGCGGGGCCACCCAGTGCAACATCAT
GTAGCCCCCACACGGGGTGCCCCGGAGCCACGGGGACCCCCTCCCACCCTCTTGTCGTCGTAGC
CCCCATTTCACCGGGGCCTAAGAGCTCTCCAAGGCTTCCGGAAGGGGTTGAAGGCAAGCCTGTG
ACTGCCGCCAGGGGCCATGGGGCGCGGCAGGCGGGCCGGCCGCCCTGTACAGAGTGTAGCAATA
GGGAGTCCCTCACCGTCGCATGGCCCTCCCCAGAGCATGCCCAACCCAGGAGTCTGCCTCACCA
ATTATCCAACCACCAGGAAGGTCCTCCCTCAGAAAAGTTGATCTCCACTTCTATTTAGCTGTAT
CTAACCCACTGTGCAAGTCATCTGGGAGAGGGGCATCGGTCCCCAGGTGTGTATAGTTGTGACT
TCTCAACAGTCTAGCACCGTGTTGGACACCTCCCCCTCCACCCTCCCAGCTCTGCTGTCAGGCC
TACCCCAAATAGGCACAGGTCCCATCCCCCGTCTGTCCTCTCCCAGGGACCGTGCCCCCCACTG
GAGGGCCCTACACGTAGCCCACGCATCTCTCAGGCACCGTCAGTGTCACGTTCTTGGAGGCCGA
TGGCCTGTCTGTAAAGACTTGAGCTTGTGTGCCACGCTGTGGTCACATCTCCTGCTTCCTCCCA
TCCTGTGTCCGGGCCCAGTTCACATCGGGAGGGTGTCCACTGTGCTCTTGGCTCTTCTTTTACT
TGCCATGTCTGGCCCAGGGGCACGGAGCTGAGTGGGGACAGGTCTGGGCAGTAGCTGATCCAGT
GCTTGGAAGAAAGAGGGGATCCGAGGCCAAGGCCAGGACAGACGGAAGGGGACCCAGAACAGAC
GTCGACCCAGACGCTCGTTACCCACCGGGGGCCACTGCAGGAGTGCCAGTGGGATGTCACCACA
CCAGCCCAACACCCAGACCTCCATCAAGAACGCTGACAGGCGGGAGAGACCGCGTGACCCAGCC
GTGTCCCATCCTCTGGTGGCGTATTTGAACCAGCCTAACAATTCCACCTGTCCAACTTGATGTA
CATTTGCTATAGCCAGCCCGGCACAGCCCGTGTGACCTCTCTGTCCGTGTATGTGTGTCGTGAC
CGGCCTTAGTAGTTAGTGTAACTCAAGGTTCGCTGATGTTCCGTCATCCATCAGAGAAAATAAA
ATGGAAACCACATACACCGCTTTTTAAACGCTTTAATTTTTTTCCTTGATTATGGAAGTGATTG
ATGTACATAGTAAATCATTTTAAAAGTACAGAAAATATAAAGACCTTTTTGTTTGTTTGTT

hide sequence

RefSeq Acc Id:

XM_040276733 ⟹ XP_040132667

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	114,965,996 - 115,045,025 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005323750	(Get FASTA)	NCBI Sequence Viewer
	XP_021581093	(Get FASTA)	NCBI Sequence Viewer
	XP_021581094	(Get FASTA)	NCBI Sequence Viewer
	XP_040132667	(Get FASTA)	NCBI Sequence Viewer
	XP_077880440	(Get FASTA)	NCBI Sequence Viewer
	XP_077880441	(Get FASTA)	NCBI Sequence Viewer
	XP_077880442	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000565.3
	ENSSTOP00000027840.1
	ENSSTOP00015021866
GenBank Protein	KAG3259375	(Get FASTA)	NCBI Sequence Viewer
	KAG3259376	(Get FASTA)	NCBI Sequence Viewer
	KAG3259377	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005323750 ⟸ XM_005323693
- Peptide Label:	isoform X3
- UniProtKB:	A0A287D2V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELKQSLSTHLEAEKPLRRYGAVEETAWKAEGLGRTQLDIISMAETTMMPEEIELEMAKIQRLR EVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEEEKTKLQKQREDELIQKIHRLVQKRD FLVDDAEVERLREQEEDKEMADFLRIKLKPLDKVAKSPASSRAEKKAEPPPSKPTVAKTGLALI KDCCGATQCNIM hide sequence

RefSeq Acc Id:

XP_021581094 ⟸ XM_021725419

- Peptide Label:

isoform X4

- Sequence:

show sequence

MELKQSLSTHLEAEKPLRRYGAVEETAWKAEGLGRTQLDIISMAETTMMPEEIELEMAKIQRLR
EVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPEEKTKLQKQREDELIQKIHRLVQKRDF
LVDDAEVERLREQEEDKEMADFLRIKLKPLDKVAKSPASSRAEKKAEPPPSKPTVAKTGLALIK
DCCGATQCNIM

hide sequence

RefSeq Acc Id:

XP_021581093 ⟸ XM_021725418

- Peptide Label:

isoform X1

- Sequence:

show sequence

MELKQSLSTHLEAEKPLRRYGAVEETAWKAEGLGRTQLDIISMAETTMMPEEIELEMAKIQRLR
EVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPGRALSRGLEESLRLFHQRKVPVSPWLT
AVSPQPASDVCSSEDPGHWRTESPLRRKNQAAEAEGGRAHPEDPQTRAEERLPRGRRGGGAAKG
ARRRQGNGRFPENQVKTSRQSSQISSQLPGREESRAPT

hide sequence

RefSeq Acc Id:	XP_040132667 ⟸ XM_040276733
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000027840 ⟸ ENSSTOT00000035988

Ensembl Acc Id:

ENSSTOP00000000565 ⟸ ENSSTOT00000000620

Protein Domains

bMERB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000621	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015017723	ENTREZGENE
Ensembl Transcript	ENSSTOT00000000620.3	UniProtKB/TrEMBL
	ENSSTOT00000035988.1	UniProtKB/TrEMBL
InterPro	bMERB_dom	UniProtKB/TrEMBL
	C16orf45-like	UniProtKB/TrEMBL
KEGG Report	iti:101962667	UniProtKB/TrEMBL
NCBI Gene	LOC101962667	ENTREZGENE
PANTHER	BMERB DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR22704	UniProtKB/TrEMBL
Pfam	DUF3585	UniProtKB/TrEMBL
PROSITE	BMERB	UniProtKB/TrEMBL
SMART	DUF3585	UniProtKB/TrEMBL
UniProt	A0A287D2V3	ENTREZGENE, UniProtKB/TrEMBL
	I3LX21_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-02-26	Bmerb1	bMERB domain containing 1	CUNH16orf45	chromosome unknown C16orf45 homolog	Symbol and/or name change	5135510	APPROVED
2017-07-13	CUNH16orf45	chromosome unknown C16orf45 homolog	LOC101962667	chromosome unknown open reading frame, human C16orf45	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar