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Gene: CHMP4A (charged multivesicular body protein 4A) Canis lupus familiaris

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Symbol:

CHMP4A

Name:

charged multivesicular body protein 4A

RGD ID:

12375018

Description:

ENCODES a protein that exhibits ATPase binding (inferred); identical protein binding (inferred); protein homodimerization activity (inferred); INVOLVED IN autophagosome maturation (inferred); autophagy (inferred); late endosome to lysosome transport (inferred); FOUND IN amphisome membrane (inferred); autophagosome membrane (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromatin modifying protein 4A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,195,975 - 4,200,086 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,771 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,306,533 - 4,310,856 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,306,567 - 4,310,860 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,996,938 - 4,001,258 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,058 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,379 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome maturation (IEA)

autophagy (IEA)

late endosome to lysosome transport (IEA)

late endosome to vacuole transport via multivesicular body sorting pathway (IBA)

membrane invagination (IEA)

midbody abscission (IEA)

mitotic metaphase chromosome alignment (IEA)

multivesicular body sorting pathway (IEA)

nervous system process (IEA)

nuclear membrane reassembly (IBA,IEA)

nucleus organization (IEA)

plasma membrane repair (IEA)

plasma membrane tubulation (IEA)

post-translational protein targeting to endoplasmic reticulum membrane (IEA)

protein polymerization (IEA)

protein transport (IEA)

regulation of mitotic spindle assembly (IEA)

ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (IEA)

vacuolar transport (IEA)

vesicle budding from membrane (IBA,IEA)

viral budding from plasma membrane (IEA)

viral budding via host ESCRT complex (IEA)

Cellular Component

amphisome membrane (IEA)

autophagosome membrane (IEA)

cytoplasm (IEA)

cytoplasmic side of plasma membrane (IBA,IEA)

endosome (IEA)

endosome membrane (IEA)

ESCRT III complex (IBA,IEA)

kinetochore (IEA)

kinetochore microtubule (IEA)

late endosome membrane (IEA)

lysosomal membrane (IEA)

membrane coat (IEA)

midbody (IEA)

multivesicular body (IBA)

multivesicular body membrane (IEA)

nuclear envelope (IBA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

ATPase binding (IEA)

identical protein binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CHMP4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,195,975 - 4,200,086 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,771 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,306,533 - 4,310,856 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,306,567 - 4,310,860 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,996,938 - 4,001,258 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,058 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,379 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CHMP4A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,209,615 - 24,213,488 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,209,615 - 24,213,830 (-)	Ensembl			hg38	GRCh38
GRCh37	14	24,678,821 - 24,682,694 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,748,627 - 23,753,025 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	23,748,626 - 23,753,025	NCBI
Celera	14	4,543,256 - 4,547,822 (-)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,793,794 - 4,798,040 (-)	NCBI		HuRef
CHM1_1	14	24,677,437 - 24,681,686 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,407,991 - 18,411,864 (-)	NCBI		T2T-CHM13v2.0

CHMP4A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,563,742 - 25,567,848 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,780,234 - 24,784,336 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,985,642 - 4,989,985 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,109,521 - 23,114,253 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

Chmp4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,044,063 - 36,048,021 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	341,307 - 345,104 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	341,066 - 344,928 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHMP4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,089,423 - 75,097,761 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	75,089,092 - 75,093,796 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,356,658 - 80,361,183 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHMP4A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,192,581 - 1,196,989 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,192,842 - 1,197,742 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666036	12,876,430 - 12,881,383 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chmp4a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624820	8,281,081 - 8,284,969 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in CHMP4A
29 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014115788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014115790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014115791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014115792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038482873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038673233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_537387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000093068 ⟹ ENSCAFP00000043704

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	4,195,975 - 4,200,086 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845011039 ⟹ ENSCAFP00845008614

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	4,306,567 - 4,310,860 (-)	Ensembl

RefSeq Acc Id:

XM_014115788 ⟹ XP_013971263

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,757 (-)	NCBI

Sequence:

show sequence

CGGCTCCAGTTGATGATGTCGCGGCGGGGCCCCAAGGAGGGATTGGCCCAGGCCTGCCTGAGCG
CTGAGGCCGCACCCTCCCGGGGGCAAGGCGGAAGTGGCGGGACGCGGTGGGGCGGAGGCGGGCC
CGCGAGGGTGGACATGAGTGGTCTCGGCAGACTCTTCGGGAGGGGCCTGCTTGATTGGACTCCA
GGGAAGAAGGAGAAGGGACCAACCCCTGAGGAGGCAATACAGAAACTGAAGGAGACAGAGAAGA
TATTGATAAAGAAACAGGAGTTTCTGGAGCAGAAGATTCAACAGGAGTTACAAATGGCCAAGAA
GCATGGGATCAAAAATAAGAGAGCCGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTGGAACAG
CAGCTGGCACAAACCGATGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATG
CCACCACCAATGCAGAAGTGCTTCGTACCATGGAGCTTGCTGCCCAAGGCATGAAGAAGGCCTA
CCAGGACATGGACATTGACAAGGTGGATGAACTGATGGCTGACATTACAGAACAACAAGAGGTG
GCCCAGCAGATTTCAGATGCCATTTCTCGGCCTGTGGGCTTTGGAGATGTTGTAGATGAGGATG
AGCTATTGGAAGAGCTAGAGTTGCTGGAGCAGGAGGAACTGGCTCGGGACTTGTTAACCGTGGG
TGACAAAGAGGAAGAACCCCCCGTTGAACTGCCCAGTGTACCCTCTACACATCTGCCTGTGGGA
CCAGGTATCCTTGTCAAAGAAGCTCCCGAAGCAGACGAAGATGAAGCAGCACTTAAGCAGTTGG
CTGAGTGGGTATCCTGATAAGTCTGGGTTGCTTTTCCCGGCACTGCCTTCATTGGTCTCTTTTC
CTTAAGTGCCAAGTGCTAAGCTAAAGGATCCTAGCCTGTTGGGGAGGTCCTGCTGAGCGGTGAT
AGTGTGACCCTGCCTGGAAAGGGGTTGTTGCCCTCCCCTTCTTGGCCCAACTCTGAAAAAGGAT
GTTGGCGCGAGAGGAGCCCCCAGGCCCCCTTCTCTTTGATAGCAGTCACGGTGCCCTCGTTCCC
AATAAAATCGGGCAGATGGAACTGTAGTGCTTACACTGCCTTGTCTACATCTGAAA

hide sequence

RefSeq Acc Id:

XM_014115790 ⟹ XP_013971265

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,753 (-)	NCBI

Sequence:

show sequence

CGGCTCCAGTTGATGATGTCGCGGCGGGGCCCCAAGGAGGGATTGGCCCAGGCCTGCCTGAGCG
CTGAGGCCGCACCCTCCCGGGGGCAAGGCGGAAGTGGCGGGACGCGGTGGGGCGGAGGCGGGCC
CGCGAGGGTGGACATGAGTGGTCTCGGCAGACTCTTCGGGAGGGGCCTGCTTGATTGGACTCCA
GGGAAGAAGGAGAAGGGACCAACCCCTGAGGAGGCAATACAGAAACTGAAGGAGACAGAGAAGA
TATTGATAAAGAAACAGGAGTTTCTGGAGCAGAAGATTCAACAGGAGTTACAAATGGCCAAGAA
GCATGGGATCAAAAATAAGAGAGCCGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTGGAACAG
CAGCTGGCACAAACCGATGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATG
CCACCACCAATGCAGAAGTGCTTCGTACCATGGAGCTTGCTGCCCAAGGCATGAAGAAGGCCTA
CCAGGACATGGACATTGACAAGGTGGATGAACTGATGGCTGACATTACAGAACAACAAGAGGTG
GCCCAGCAGATTTCAGATGCCATTTCTCGGCCTGTGGGCTTTGGAGATGTTGTAGATGAGGATG
AGCTATTGGAAGAGCTAGAGTTGCTGGAGCAGGAGGAACTGGCTCGGGACTTGTTAACCGTGGG
TGACAAAGAGGAAGAACCCCCCGTTGAACTGCCCAGTGTACCCTCTACACATCTGCCTGTGGGA
CCAGAAGCTCCCGAAGCAGACGAAGATGAAGCAGCACTTAAGCAGTTGGCTGAGTGGGTATCCT
GATAAGTCTGGGTTGCTTTTCCCGGCACTGCCTTCATTGGTCTCTTTTCCTTAAGTGCCAAGTG
CTAAGCTAAAGGATCCTAGCCTGTTGGGGAGGTCCTGCTGAGCGGTGATAGTGTGACCCTGCCT
GGAAAGGGGTTGTTGCCCTCCCCTTCTTGGCCCAACTCTGAAAAAGGATGTTGGCGCGAGAGGA
GCCCCCAGGCCCCCTTCTCTTTGATAGCAGTCACGGTGCCCTCGTTCCCAATAAAATCGGGCAG
ATGGAACTGTAGTGCTTACACTGCCTTGTCTACATCTGAAA

hide sequence

RefSeq Acc Id:

XM_014115791 ⟹ XP_013971266

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,753 (-)	NCBI

Sequence:

show sequence

CGGCTCCAGTTGATGATGTCGCGGCGGGGCCCCAAGGAGGGATTGGCCCAGGCCTGCCTGAGCG
CTGAGGCCGCACCCTCCCGGGGGCAAGGCGGAAGTGGCGGGACGCGGTGGGGCGGAGGCGGGCC
CGCGAGGGTGGACATGAGTGGTCTCGGCAGACTCTTCGGGAGGGGCCTGCTTGATTGGACTCCA
GGGAAGAAGGAGAAGGGACCAACCCCTGAGGAGGCAATACAGAAACTGAAGGAGACAGAGAAGA
TATTGATAAAGAAACAGGAGTTTCTGGAGCAGAAGATTCAACAGGAGTTACAAATGGCCAAGAA
GCATGGGATCAAAAATAAGAGAGCCGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTGGAACAG
CAGCTGGCACAAACCGATGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATG
CCACCACCAATGCAGAAGTGCTTCGTACCATGGAGCTTGCTGCCCAAGGCATGAAGAAGGCCTA
CCAGGACATGGACATTGACAAGGTGGATGAACTGATGGCTGACATTACAGAACAACAAGAGGTG
GCCCAGCAGATTTCAGATGCCATTTCTCGGCCTGTGGGCTTTGGAGATGTTGTAGATGAGGATG
AGCTATTGGAAGAGCTAGAGTTGCTGGAGCAGGAGGAACTGGCTCGGGACTTGTTAACCGTGGG
TGACAAAGAGGAAGAACCCCCCGTTGAACTGCCCAGTGTACCCTCTACACATCTGCCTGTGGGA
CCAGCTCCCGAAGCAGACGAAGATGAAGCAGCACTTAAGCAGTTGGCTGAGTGGGTATCCTGAT
AAGTCTGGGTTGCTTTTCCCGGCACTGCCTTCATTGGTCTCTTTTCCTTAAGTGCCAAGTGCTA
AGCTAAAGGATCCTAGCCTGTTGGGGAGGTCCTGCTGAGCGGTGATAGTGTGACCCTGCCTGGA
AAGGGGTTGTTGCCCTCCCCTTCTTGGCCCAACTCTGAAAAAGGATGTTGGCGCGAGAGGAGCC
CCCAGGCCCCCTTCTCTTTGATAGCAGTCACGGTGCCCTCGTTCCCAATAAAATCGGGCAGATG
GAACTGTAGTGCTTACACTGCCTTGTCTACATCTGAAA

hide sequence

RefSeq Acc Id:

XM_014115792 ⟹ XP_013971267

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,771 (-)	NCBI

Sequence:

show sequence

CGGCTCCAGTTGATGATGTCGCGGCGGGGCCCCAAGGAGGGATTGGCCCAGGCCTGCCTGAGCG
CTGAGGCCGCACCCTCCCGGGGGCAAGGCGGAAGTGGCGGGACGCGGTGGGGCGGAGGCGGGCC
CGCGAGGGTGGACATGAGTGGTCTCGGCAGACTCTTCGGGAGGGGGAAGAAGGAGAAGGGACCA
ACCCCTGAGGAGGCAATACAGAAACTGAAGGAGACAGAGAAGATATTGATAAAGAAACAGGAGT
TTCTGGAGCAGAAGATTCAACAGGAGTTACAAATGGCCAAGAAGCATGGGATCAAAAATAAGAG
AGCCGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTGGAACAGCAGCTGGCACAAACCGATGGG
ACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCACCACCAATGCAGAAGTGC
TTCGTACCATGGAGCTTGCTGCCCAAGGCATGAAGAAGGCCTACCAGGACATGGACATTGACAA
GGTGGATGAACTGATGGCTGACATTACAGAACAACAAGAGGTGGCCCAGCAGATTTCAGATGCC
ATTTCTCGGCCTGTGGGCTTTGGAGATGTTGTAGATGAGGATGAGCTATTGGAAGAGCTAGAGT
TGCTGGAGCAGGAGGAACTGGCTCGGGACTTGTTAACCGTGGGTGACAAAGAGGAAGAACCCCC
CGTTGAACTGCCCAGTGTACCCTCTACACATCTGCCTGTGGGACCAGGTATCCTTGTCAAAGAA
GCTCCCGAAGCAGACGAAGATGAAGCAGCACTTAAGCAGTTGGCTGAGTGGGTATCCTGATAAG
TCTGGGTTGCTTTTCCCGGCACTGCCTTCATTGGTCTCTTTTCCTTAAGTGCCAAGTGCTAAGC
TAAAGGATCCTAGCCTGTTGGGGAGGTCCTGCTGAGCGGTGATAGTGTGACCCTGCCTGGAAAG
GGGTTGTTGCCCTCCCCTTCTTGGCCCAACTCTGAAAAAGGATGTTGGCGCGAGAGGAGCCCCC
AGGCCCCCTTCTCTTTGATAGCAGTCACGGTGCCCTCGTTCCCAATAAAATCGGGCAGATGGAA
CTGTAGTGCTTACACTGCCTTGTCTACATCTGAAA

hide sequence

RefSeq Acc Id:

XM_038482869 ⟹ XP_038338797

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,996,938 - 4,001,244 (-)	NCBI

RefSeq Acc Id:

XM_038482870 ⟹ XP_038338798

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,996,938 - 4,001,240 (-)	NCBI

RefSeq Acc Id:

XM_038482871 ⟹ XP_038338799

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,996,938 - 4,001,240 (-)	NCBI

RefSeq Acc Id:

XM_038482872 ⟹ XP_038338800

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,996,938 - 4,001,258 (-)	NCBI

RefSeq Acc Id:

XM_038482873 ⟹ XP_038338801

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	3,996,938 - 4,001,258 (-)	NCBI

RefSeq Acc Id:

XM_038544301 ⟹ XP_038400229

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,365 (-)	NCBI

RefSeq Acc Id:

XM_038544302 ⟹ XP_038400230

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,361 (-)	NCBI

RefSeq Acc Id:

XM_038544303 ⟹ XP_038400231

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,361 (-)	NCBI

RefSeq Acc Id:

XM_038544304 ⟹ XP_038400232

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,379 (-)	NCBI

RefSeq Acc Id:

XM_038544305 ⟹ XP_038400233

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	4,321,058 - 4,325,379 (-)	NCBI

RefSeq Acc Id:

XM_038608420 ⟹ XP_038464348

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,044 (-)	NCBI

RefSeq Acc Id:

XM_038608421 ⟹ XP_038464349

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,040 (-)	NCBI

RefSeq Acc Id:

XM_038608422 ⟹ XP_038464350

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,040 (-)	NCBI

RefSeq Acc Id:

XM_038608423 ⟹ XP_038464351

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,058 (-)	NCBI

RefSeq Acc Id:

XM_038608424 ⟹ XP_038464352

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	4,058,741 - 4,063,058 (-)	NCBI

RefSeq Acc Id:

XM_038673228 ⟹ XP_038529156

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,306,533 - 4,310,842 (-)	NCBI

RefSeq Acc Id:

XM_038673230 ⟹ XP_038529158

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,306,533 - 4,310,838 (-)	NCBI

RefSeq Acc Id:

XM_038673231 ⟹ XP_038529159

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,306,533 - 4,310,838 (-)	NCBI

RefSeq Acc Id:

XM_038673232 ⟹ XP_038529160

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,306,533 - 4,310,856 (-)	NCBI

RefSeq Acc Id:

XM_038673233 ⟹ XP_038529161

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	4,306,533 - 4,310,856 (-)	NCBI

RefSeq Acc Id:

XM_537387 ⟹ XP_537387

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	4,195,766 - 4,200,101 (-)	NCBI
Dog10K_Boxer_Tasha	8	4,117,449 - 4,121,771 (-)	NCBI

Sequence:

show sequence

CGGCTCCAGTTGATGATGTCGCGGCGGGGCCCCAAGGAGGGATTGGCCCAGGCCTGCCTGAGCG
CTGAGGCCGCACCCTCCCGGGGGCAAGGCGGAAGTGGCGGGACGCGGTGGGGCGGAGGCGGGCC
CGCGAGGGTGGACATGAGTGGTCTCGGCAGACTCTTCGGGAGGGGGAAGAAGGAGAAGGGACCA
ACCCCTGAGGAGGCAATACAGAAACTGAAGGAGACAGAGAAGATATTGATAAAGAAACAGGAGT
TTCTGGAGCAGAAGATTCAACAGGAGTTACAAATGGCCAAGAAGCATGGGATCAAAAATAAGAG
AGCCGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTGGAACAGCAGCTGGCACAAACCGATGGG
ACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCACCACCAATGCAGAAGTGC
TTCGTACCATGGAGCTTGCTGCCCAAGGCATGAAGAAGGCCTACCAGGACATGGACATTGACAA
GGTGGATGAACTGATGGCTGACATTACAGAACAACAAGAGGTGGCCCAGCAGATTTCAGATGCC
ATTTCTCGGCCTGTGGGCTTTGGAGATGTTGTAGATGAGGATGAGCTATTGGAAGAGCTAGAGT
TGCTGGAGCAGGAGGAACTGGCTCGGGACTTGTTAACCGTGGGTGACAAAGAGGAAGAACCCCC
CGTTGAACTGCCCAGTGTACCCTCTACACATCTGCCTGTGGGACCAGCTCCCGAAGCAGACGAA
GATGAAGCAGCACTTAAGCAGTTGGCTGAGTGGGTATCCTGATAAGTCTGGGTTGCTTTTCCCG
GCACTGCCTTCATTGGTCTCTTTTCCTTAAGTGCCAAGTGCTAAGCTAAAGGATCCTAGCCTGT
TGGGGAGGTCCTGCTGAGCGGTGATAGTGTGACCCTGCCTGGAAAGGGGTTGTTGCCCTCCCCT
TCTTGGCCCAACTCTGAAAAAGGATGTTGGCGCGAGAGGAGCCCCCAGGCCCCCTTCTCTTTGA
TAGCAGTCACGGTGCCCTCGTTCCCAATAAAATCGGGCAGATGGAACTGTAGTGCTTACACTGC
CTTGTCTACATCTGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013971263	(Get FASTA)	NCBI Sequence Viewer
	XP_013971265	(Get FASTA)	NCBI Sequence Viewer
	XP_013971266	(Get FASTA)	NCBI Sequence Viewer
	XP_013971267	(Get FASTA)	NCBI Sequence Viewer
	XP_038338797	(Get FASTA)	NCBI Sequence Viewer
	XP_038338798	(Get FASTA)	NCBI Sequence Viewer
	XP_038338799	(Get FASTA)	NCBI Sequence Viewer
	XP_038338800	(Get FASTA)	NCBI Sequence Viewer
	XP_038338801	(Get FASTA)	NCBI Sequence Viewer
	XP_038400229	(Get FASTA)	NCBI Sequence Viewer
	XP_038400230	(Get FASTA)	NCBI Sequence Viewer
	XP_038400231	(Get FASTA)	NCBI Sequence Viewer
	XP_038400232	(Get FASTA)	NCBI Sequence Viewer
	XP_038400233	(Get FASTA)	NCBI Sequence Viewer
	XP_038464348	(Get FASTA)	NCBI Sequence Viewer
	XP_038464349	(Get FASTA)	NCBI Sequence Viewer
	XP_038464350	(Get FASTA)	NCBI Sequence Viewer
	XP_038464351	(Get FASTA)	NCBI Sequence Viewer
	XP_038464352	(Get FASTA)	NCBI Sequence Viewer
	XP_038529156	(Get FASTA)	NCBI Sequence Viewer
	XP_038529158	(Get FASTA)	NCBI Sequence Viewer
	XP_038529159	(Get FASTA)	NCBI Sequence Viewer
	XP_038529160	(Get FASTA)	NCBI Sequence Viewer
	XP_038529161	(Get FASTA)	NCBI Sequence Viewer
	XP_537387	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000043704.2
	ENSCAFP00000075306.1
	ENSCAFP00845008614
	ENSCAFP00845008614.1

RefSeq Acc Id:	XP_537387 ⟸ XM_537387
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSRRGPKEGLAQACLSAEAAPSRGQGGSGGTRWGGGGPARVDMSGLGRLFGRGKKEKGPTPEE AIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKRAALQALRRKKRLEQQLAQTDGTLST LEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMADITEQQEVAQQISDAISRP VGFGDVVDEDELLEELELLEQEELARDLLTVGDKEEEPPVELPSVPSTHLPVGPAPEADEDEAA LKQLAEWVS hide sequence

RefSeq Acc Id:	XP_013971267 ⟸ XM_014115792
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSRRGPKEGLAQACLSAEAAPSRGQGGSGGTRWGGGGPARVDMSGLGRLFGRGKKEKGPTPEE AIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKRAALQALRRKKRLEQQLAQTDGTLST LEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMADITEQQEVAQQISDAISRP VGFGDVVDEDELLEELELLEQEELARDLLTVGDKEEEPPVELPSVPSTHLPVGPGILVKEAPEA DEDEAALKQLAEWVS hide sequence

RefSeq Acc Id:	XP_013971266 ⟸ XM_014115791
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSRRGPKEGLAQACLSAEAAPSRGQGGSGGTRWGGGGPARVDMSGLGRLFGRGLLDWTPGKKE KGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKRAALQALRRKKRLEQQLAQ TDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMADITEQQEVAQQI SDAISRPVGFGDVVDEDELLEELELLEQEELARDLLTVGDKEEEPPVELPSVPSTHLPVGPAPE ADEDEAALKQLAEWVS hide sequence

RefSeq Acc Id:	XP_013971265 ⟸ XM_014115790
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSRRGPKEGLAQACLSAEAAPSRGQGGSGGTRWGGGGPARVDMSGLGRLFGRGLLDWTPGKKE KGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKRAALQALRRKKRLEQQLAQ TDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMADITEQQEVAQQI SDAISRPVGFGDVVDEDELLEELELLEQEELARDLLTVGDKEEEPPVELPSVPSTHLPVGPEAP EADEDEAALKQLAEWVS hide sequence

RefSeq Acc Id:	XP_013971263 ⟸ XM_014115788
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSRRGPKEGLAQACLSAEAAPSRGQGGSGGTRWGGGGPARVDMSGLGRLFGRGLLDWTPGKKE KGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQMAKKHGIKNKRAALQALRRKKRLEQQLAQ TDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMADITEQQEVAQQI SDAISRPVGFGDVVDEDELLEELELLEQEELARDLLTVGDKEEEPPVELPSVPSTHLPVGPGIL VKEAPEADEDEAALKQLAEWVS hide sequence

Ensembl Acc Id:

ENSCAFP00000043704 ⟸ ENSCAFT00000093068

RefSeq Acc Id:	XP_038338801 ⟸ XM_038482873
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038338800 ⟸ XM_038482872
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038338797 ⟸ XM_038482869
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038338799 ⟸ XM_038482871
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038338798 ⟸ XM_038482870
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038464352 ⟸ XM_038608424
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038464351 ⟸ XM_038608423
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038464348 ⟸ XM_038608420
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038464350 ⟸ XM_038608422
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038464349 ⟸ XM_038608421
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038529161 ⟸ XM_038673233
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529160 ⟸ XM_038673232
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529156 ⟸ XM_038673228
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529159 ⟸ XM_038673231
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038529158 ⟸ XM_038673230
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400233 ⟸ XM_038544305
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400232 ⟸ XM_038544304
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3N241 (UniProtKB/TrEMBL), A0A8P0NU42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400229 ⟸ XM_038544301
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400231 ⟸ XM_038544303
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038400230 ⟸ XM_038544302
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JMJ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845008614 ⟸ ENSCAFT00845011039

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000041020	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845006228	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000093068.2	UniProtKB/TrEMBL
	ENSCAFT00000109979.1	UniProtKB/TrEMBL
	ENSCAFT00845011039	ENTREZGENE
	ENSCAFT00845011039.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.1710	UniProtKB/TrEMBL
	ESAT-6-like	UniProtKB/TrEMBL
InterPro	Snf7_fam	UniProtKB/TrEMBL
NCBI Gene	CHMP4A	ENTREZGENE
PANTHER	CHARGED MULTIVESICULAR BODY PROTEIN 4A	UniProtKB/TrEMBL
	PTHR22761	UniProtKB/TrEMBL
Pfam	Snf7	UniProtKB/TrEMBL
UniProt	A0A8C0JMJ9	ENTREZGENE
	A0A8I3N241	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NU42	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TV47_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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