Chmp4a (charged multivesicular body protein 4A) - Rat Genome Database

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Gene: Chmp4a (charged multivesicular body protein 4A) Ictidomys tridecemlineatus
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Symbol: Chmp4a
Name: charged multivesicular body protein 4A
RGD ID: 12685262
Description: ENCODES a protein that exhibits ATPase binding (inferred); identical protein binding (inferred); protein homodimerization activity (inferred); INVOLVED IN autophagosome maturation (inferred); autophagy (inferred); late endosome to lysosome transport (inferred); FOUND IN endosome (ortholog); nuclear pore (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,044,063 - 36,048,021 (-)NCBI
SpeTri2.0NW_004936722341,066 - 344,928 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Chmp4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,044,063 - 36,048,021 (-)NCBI
SpeTri2.0NW_004936722341,066 - 344,928 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1424,209,615 - 24,213,830 (-)EnsemblGRCh38hg38GRCh38
GRCh381424,209,615 - 24,213,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371424,678,821 - 24,682,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,748,627 - 23,753,025 (-)NCBINCBI36hg18NCBI36
Build 341423,748,626 - 23,753,025NCBI
Celera144,543,256 - 4,547,822 (-)NCBI
Cytogenetic Map14q12NCBI
HuRef144,793,794 - 4,798,040 (-)NCBIHuRef
CHM1_11424,677,437 - 24,681,686 (-)NCBICHM1_1
CHMP4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11423,109,521 - 23,114,253 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0144,985,642 - 4,989,985 (-)NCBIMhudiblu_PPA_v0panPan3
CHMP4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,195,766 - 4,200,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,195,975 - 4,200,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,117,449 - 4,121,771 (-)NCBI
ROS_Cfam_1.084,306,533 - 4,310,856 (-)NCBI
ROS_Cfam_1.0 Ensembl84,306,567 - 4,310,860 (-)Ensembl
UMICH_Zoey_3.183,996,938 - 4,001,258 (-)NCBI
UNSW_CanFamBas_1.084,058,741 - 4,063,058 (-)NCBI
UU_Cfam_GSD_1.084,321,058 - 4,325,379 (-)NCBI
CHMP4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,088,271 - 75,097,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,089,092 - 75,093,796 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,356,658 - 80,361,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHMP4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,192,581 - 1,196,989 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl241,192,842 - 1,197,742 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603612,876,430 - 12,881,383 (-)NCBIVero_WHO_p1.0
Chmp4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248208,281,081 - 8,284,969 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005338723   ⟹   XP_005338780
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864036,044,063 - 36,048,021 (-)NCBI
SpeTri2.0NW_004936722341,066 - 344,928 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338780 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3260982 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338780   ⟸   XM_005338723
- UniProtKB: A0A287D390 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029882 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000028018 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000039364 UniProtKB/TrEMBL
InterPro Snf7_fam UniProtKB/TrEMBL
NCBI Gene Chmp4a ENTREZGENE
Pfam Snf7 UniProtKB/TrEMBL
UniProt A0A287D390 ENTREZGENE, UniProtKB/TrEMBL