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Gene: TTC9B (tetratricopeptide repeat domain 9B) Canis lupus familiaris

Analyze

Symbol:

TTC9B

Name:

tetratricopeptide repeat domain 9B

RGD ID:

12227144

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat protein 9B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,419,556 - 113,422,057 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,419,715 - 113,422,045 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,821,320 - 112,823,816 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,018,214 - 114,020,735 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,018,371 - 114,020,723 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,577,183 - 113,579,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,209,692 - 113,212,191 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,203,583 - 114,206,063 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TTC9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,419,556 - 113,422,057 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,419,715 - 113,422,045 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,821,320 - 112,823,816 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,018,214 - 114,020,735 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,018,371 - 114,020,723 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,577,183 - 113,579,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,209,692 - 113,212,191 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,203,583 - 114,206,063 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

TTC9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,216,058 - 40,218,384 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,216,058 - 40,218,388 (-)	Ensembl			hg38	GRCh38
GRCh37	19	40,721,965 - 40,724,291 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,413,805 - 45,416,138 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	37,521,518 - 37,523,859 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,156,908 - 37,159,249 (-)	NCBI		HuRef
CHM1_1	19	40,721,642 - 40,723,983 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,036,569 - 43,038,895 (-)	NCBI		T2T-CHM13v2.0

Ttc9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,353,349 - 27,355,632 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,353,340 - 27,356,771 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	27,653,924 - 27,656,207 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	27,653,915 - 27,657,346 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	28,438,943 - 28,441,226 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,362,675 - 27,364,970 (+)	NCBI		MGSCv36	mm8
Celera	7	22,236,080 - 22,238,363 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	15.95	NCBI

Ttc9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	92,081,026 - 92,083,208 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	92,080,806 - 92,083,203 (+)	Ensembl				GRCr8
mRatBN7.2	1	82,953,434 - 82,955,659 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	82,953,434 - 82,955,616 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	88,356,016 - 88,358,198 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	96,836,604 - 96,838,792 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	90,111,879 - 90,114,061 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	90,694,948 - 90,697,130 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	95,837,834 - 95,840,016 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	92,368,547 - 92,370,729 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	90,825,727 - 90,827,909 (+)	NCBI		F344_StmMcwi
Rnor_6.0	1	84,470,829 - 84,473,011 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,470,829 - 84,473,011 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	85,683,938 - 85,686,120 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	82,748,075 - 82,750,257 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	77,359,569 - 77,361,751 (+)	NCBI		Celera
RGSC_v3.1	1	82,826,189 - 82,828,330 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

Ttc9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	1,015,124 - 1,018,135 (+)	Ensembl
ChiLan1.0	NW_004955578	1,014,670 - 1,018,120 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,475,354 - 46,477,807 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,345,991 - 48,348,466 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,260,791 - 37,263,267 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	45,775,896 - 45,778,427 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

Ttc9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,210,325 - 14,212,666 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,637,189 - 2,640,725 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,638,394 - 2,640,785 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100522141
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,545,334 - 48,547,514 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	48,509,998 - 48,554,374 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	44,200,834 - 44,329,821 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC9B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,674,727 - 34,677,439 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,674,716 - 34,677,153 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	12,767,764 - 12,770,379 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc9b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	250,240 - 252,723 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624925	250,231 - 252,716 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ttc9b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	168,286,987 - 168,289,358 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in TTC9B
15 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	ectoderm	endocrine system	endoderm	hemolymphoid system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
5	5	17	13	10	3	3	10	5	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003638830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038468134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038593153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000044645 ⟹ ENSCAFP00000038177

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	113,419,715 - 113,422,045 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845007186 ⟹ ENSCAFP00845005719

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	114,018,371 - 114,020,723 (+)	Ensembl

RefSeq Acc Id:

XM_003638830 ⟹ XP_003638878

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	113,419,556 - 113,422,057 (+)	NCBI
Dog10K_Boxer_Tasha	1	112,821,320 - 112,823,816 (+)	NCBI

Sequence:

show sequence

ATTTGGAGAATAGAACGGGAAAGTCCGGAGGGGTTTCTCTACACCCATAGGGGGCAGGCGGAGT
CGGCTGCCGGAGGTGCGGGGGCGGAGAAAGGGTGGGGACCGGCCCCGCGGGGGGCGATGCGGTA
GCTGCAGCGGCGGCCGCAGGAGTTTCCCACAATGCAGCGCGGCGCGCTGTCCCCGGTGCTGATG
CTCAGCGCTGCCCCGGAGCCTCCGCCGCGCCCGCCTCCCGCCCTCTCCCCGCCGGGCCCGGGCC
CCCGCCATGGCTCGGCCCGGCCCAGCCCTGCCCCAGAGCCGTCGGGGGGCCTGGGCGCGGCGCT
CGACAGCAGCCTGCGGGCCGCCGTGGCGTTCAAGGCGGAGGGCCAGCGCTGCTACCGAGAGAAG
AAGTTCCGGGAAGCCATCGGCAAGTATCATCGGGCACTGCTGCAGCTGAAGGCGGCTCAGGGGG
CCCGCCCTGGAGGCCTGCCCGCCCCCGCCCCCGGGCCCGCCGGCAGCCCCGGGCCGGCCCGCCT
CAGCGAGGAGCAGCGGCGCCTGGTGGAGAACACGGAGGTGGAATGTTATGACTCTCTCACCGCC
TGCCTGCTGCAGTCGGAGCTGGTGAACTACGAGCGGGTGCGCGAGTATTGCCTCAAGGTCCTGG
AGAAGCAGCAGGGCAACTTCAAGGCCACCTACCGCGCCGGCATTGCCTTCTACCACCTGGGCGA
CTATGCTCGCGCGCTGCGCTACCTGCAGGAGGCCCGCAGCCGGGAGCCCACAGACACCAATGTC
CTCCGCTACATCCAGCTGACTCAGCTGAAGATGCACCGTTGCAGCCTCCAGCAGGAAGACAGTC
GGGCCGGGGCCGGGACTCGAGATGTCGTTGGCTAAGGCCAACCTAGGGGGACTTTCCCTCCCCC
TACTCCCACCTCAGCGTGTAACTTCCCCTGACTTATGTGTTTGCTGGTAAAGCCCTTGTCACTG
GTGACCATAA

hide sequence

RefSeq Acc Id:

XM_038468134 ⟹ XP_038324062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	113,577,183 - 113,579,671 (+)	NCBI

RefSeq Acc Id:

XM_038528884 ⟹ XP_038384812

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	114,203,583 - 114,206,063 (+)	NCBI

RefSeq Acc Id:

XM_038593153 ⟹ XP_038449081

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	113,209,692 - 113,212,191 (+)	NCBI

RefSeq Acc Id:

XM_038656979 ⟹ XP_038512907

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	114,018,214 - 114,020,735 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003638878	(Get FASTA)	NCBI Sequence Viewer
	XP_038324062	(Get FASTA)	NCBI Sequence Viewer
	XP_038384812	(Get FASTA)	NCBI Sequence Viewer
	XP_038449081	(Get FASTA)	NCBI Sequence Viewer
	XP_038512907	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000038177.1
	ENSCAFP00030001701.1
	ENSCAFP00040019397.1
	ENSCAFP00845005719
	ENSCAFP00845005719.1

RefSeq Acc Id:

XP_003638878 ⟸ XM_003638830

- UniProtKB:

A0A8C0M0L8 (UniProtKB/TrEMBL), A0A8I3MTB4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQRGALSPVLMLSAAPEPPPRPPPALSPPGPGPRHGSARPSPAPEPSGGLGAALDSSLRAAVAF
KAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPGGLPAPAPGPAGSPGPARLSEEQRRLVEN
TEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQE
ARSREPTDTNVLRYIQLTQLKMHRCSLQQEDSRAGAGTRDVVG

hide sequence

Ensembl Acc Id:

ENSCAFP00000038177 ⟸ ENSCAFT00000044645

RefSeq Acc Id:

XP_038324062 ⟸ XM_038468134

RefSeq Acc Id:

XP_038449081 ⟸ XM_038593153

RefSeq Acc Id:	XP_038512907 ⟸ XM_038656979
- UniProtKB:	A0A8C0M0L8 (UniProtKB/TrEMBL), A0A8I3MTB4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038384812 ⟸ XM_038528884
- UniProtKB:	A0A8C0M0L8 (UniProtKB/TrEMBL), A0A8I3MTB4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845005719 ⟸ ENSCAFT00845007186

Promoters

RGD ID:

13682300

Promoter ID:

EPDNEW_C368

Type:

single initiation site

Name:

TTC9B_1

Description:

tetratricopeptide repeat domain 9B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	113,419,719 - 113,419,779	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000030130	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001105	UniProtKB/TrEMBL
	ENSCAFG00040012111	UniProtKB/TrEMBL
	ENSCAFG00845003986	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000044645.3	UniProtKB/TrEMBL
	ENSCAFT00030001912.1	UniProtKB/TrEMBL
	ENSCAFT00040022367.1	UniProtKB/TrEMBL
	ENSCAFT00845007186	ENTREZGENE
	ENSCAFT00845007186.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	AIP/AIPL1/TTC9	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_2	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	cfa:100855596	UniProtKB/TrEMBL
NCBI Gene	TTC9B	ENTREZGENE
PANTHER	ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 9B	UniProtKB/TrEMBL
Pfam	TPR_2	UniProtKB/TrEMBL
PROSITE	TPR	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8C0M0L8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MTB4	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:47965	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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