Gene: LOC100522141 (tetratricopeptide repeat protein 9B) Sus scrofa |
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Analyze |
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Symbol: |
LOC100522141 (Ensembl: TTC9B) |
Name: |
tetratricopeptide repeat protein 9B (Ensembl:tetratricopeptide repeat domain 9B) |
RGD ID: |
13856260 |
Description: |
ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
CNTD2; cyclin N-terminal domain containing 2; cyclin N-terminal domain-containing protein 2; tetratricopeptide repeat domain 9B; TTC9B |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
Position: |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 48,545,334 - 48,547,514 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 48,509,998 - 48,554,374 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 44,200,834 - 44,329,821 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LOC100522141 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 48,545,334 - 48,547,514 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 48,509,998 - 48,554,374 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 44,200,834 - 44,329,821 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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TTC9B (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 40,216,058 - 40,218,384 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 40,216,058 - 40,218,384 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 40,721,965 - 40,724,291 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 45,413,805 - 45,416,138 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 19 | 37,521,518 - 37,523,859 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | q13.2 | NCBI | | | | | HuRef | 19 | 37,156,908 - 37,159,249 (-) | NCBI | | HuRef | | | CHM1_1 | 19 | 40,721,642 - 40,723,983 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 43,036,569 - 43,038,895 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Ttc9b (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 7 | 27,353,349 - 27,355,632 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 27,353,340 - 27,356,771 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 7 | 27,653,924 - 27,656,207 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 27,653,915 - 27,657,346 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 7 | 28,438,943 - 28,441,226 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 7 | 27,362,675 - 27,364,970 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 7 | 22,236,080 - 22,238,363 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | A3 | NCBI | | | | | cM Map | 7 | 15.95 | NCBI | | | | |
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Ttc9b (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 92,081,026 - 92,083,208 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 82,953,434 - 82,955,659 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 82,953,434 - 82,955,616 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 88,356,016 - 88,358,198 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 96,836,604 - 96,838,792 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 90,111,879 - 90,114,061 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 84,470,829 - 84,473,011 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 84,470,829 - 84,473,011 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 85,683,938 - 85,686,120 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 82,748,075 - 82,750,257 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 82,826,189 - 82,828,330 (+) | NCBI | | | | | Celera | 1 | 77,359,569 - 77,361,751 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q21 | NCBI | | | | |
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Ttc9b (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955578 | 1,015,124 - 1,018,135 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955578 | 1,014,670 - 1,018,120 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TTC9B (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 20 | 46,475,354 - 46,477,807 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 48,345,991 - 48,348,466 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 37,260,791 - 37,263,267 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 45,775,896 - 45,778,427 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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TTC9B (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 113,419,556 - 113,422,057 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 113,419,715 - 113,422,045 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 112,821,320 - 112,823,816 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 114,018,214 - 114,020,735 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 114,018,371 - 114,020,723 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 113,577,183 - 113,579,671 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 113,209,692 - 113,212,191 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 114,203,583 - 114,206,063 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Ttc9b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024409349 | 14,210,325 - 14,212,666 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936661 | 2,637,189 - 2,640,725 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936661 | 2,638,394 - 2,640,785 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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TTC9B (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 6 | 34,674,727 - 34,677,439 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 6 | 34,674,716 - 34,677,153 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666073 | 12,767,764 - 12,770,379 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ttc9b (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
alimentary part of gastrointestinal system
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10
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4
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23
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3
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2
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5
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13
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11
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23
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3
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4
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3
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RGD:{{ data.value }}
Sequence
Ensembl Acc Id: |
ENSSSCT00000003322 ⟹ ENSSSCP00000003240 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 Ensembl | 6 | 48,545,334 - 48,547,514 (-) | Ensembl |
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RefSeq Acc Id: |
XM_003127139 ⟹ XP_003127187 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,545,331 - 48,549,887 (-) | NCBI |
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Sequence: |
AGACCCCACCAAAAAAAAAGACTCCGTGTGCATCTGTCTTCCACTTCAATAAAAGAGTTTTTAT TATTTAGAGCGCTCTTTGTCCTCAGTGGTCGAATTCTGGCCCCTCTCTCGCTTTTGATTGGTCA CTTCCCGGGCCTCTCATCCACCTGATTGGATGTTTTCACCAAGTCCCTTAACGGCCCCTGGGAG ACGCGATGAGAATTCTGGATTCCGCCACCAGAGGGCACTGGAGGGCTTCCGCAAGTGCCGCGGA GCCGGGTAAAATGCTTTGGGGAGTTAGGAGATGCTGAGAGGAAAATCGTAAGGCAAGCTGAATG ACCCTCGGTCTTCGGGTTGGGGAGAGGCTGGAGGCATGAGGACCGCGAGAAAGTGAGACTGCCT GGCCTAGTCATGAGGAATACTACCTTGATGTTGCCAGATTTTTAGATTTCGTTTGTGAAGCTTA AAATCTGTGATTCCATAAATATCTCTGCTTAGGTATTGGGGGAACGAATTCGGTGTTTTTTAAC AGATTGCGCAAACCCAGCACGTCACATCTGCTGGCCTGTGAGGTTCATCAGTTTGTGATAGTAT CGGCCTTTGATAGCAAGAGTTTGTTAAGTGGGATCTGATTTACTTAACCTCTGAAATGCCGTCT GTCAATGGGTATAACTAAGAGCACCGACCTCATGATGTGAGTTAACATAAACATAAAGCTTTAG GACCATGTCTGACATGTAAGAGGTGTTGTGAAAGTTCTAGCATTGCATCCTAGTGGGACTGTGG TTAGGTACAGTTGTCTTCTGTTTTTACCTAGCTCTTCGCCGCTTGGTACGTGGTCAAAAATATT GTTATGAATCAGTGCGTCTCCACGTTTTAAATTAAAACAGAAACACGCCTGAGGTGCAGAAAGG TGACCGATGCTGTTTTGGAACCGATCTCAGGAATATTAGACTCTAAACCAAGCCTGGGTTTGGA GATACGGAGAGGAGGAAGTTTCCACCACTGAGGTGTTCACATTCAAAGGATCAGGGATCAGGGA GAGACTTGGCAAAGTACAATAAAATATAGAAGCAGATGCTGAAGTTTGGATAGAAGGTGTCATG TTCAGGTTTGGGCCTGCAGGGTGGAACCTGCCACAGGACCTCCAGGGGAAGGGTGTGTGCTGGG AGAGGGAGGGGACAGTGGAAATGCAGGCTTGGGGCTTGGGAATGAGATCCAAGCTAGGGTCTTG GGGTTAATGCCATTCATTCAACAGCTATAACACTGGCTGTTATTTGCCTATTACTGTACCAGGC CCTGTGCTACATGCTTTACCTGCATAGTATAATTCAATCCCTACAGCTACTCTGAAGTAAGCTC ATGTGTCATCTCCATGTTACAGAGGAAGGTGGAGGGAAACCAAGGAGCTTGGCCAAAGTCCCAG TACCTGAGAAAGAGGCTAAGGAGGGTTGAAGGACAATCATTCACCCTCAGTTTTTCCCTCAAAA GCATCTTCCTCTCCCCTGTGCTCTTTTCTTATTGTGCTCCTCACTCCGGCTGTCACTTGATTGA TTTCCCACTGGTTTTCCTACCCAGCTAATGAACTCAATGTGGGCAAGATTTGTCTTGCTCGTCG AGCTCTCTCCTCCTCCAGGAAGTCTTCACTCACCACCTCAGCCTAGGCCGGGAGCCTCCTCTAG GCCCTCAGAGCCTGCCATGCTTCCCTCACCCCAGCCCTGACCCCTTGGCCTGTACCTTCCATGC TGGCCCACTTGGCTGCCACTGTCTGGTCATTAGTCTGTTTCCCCACTTGCCCAGGGACACAGTG AGGGTAGGATTTGAGGCTCTCTCAGTCCCTGCTGTGTCCAGCATCATCCAGCCCCAGAGCTGGG CACAGAAAGATGTCAGTGAATATTTGCTGCATAGATAAATGAATGGGTTCCAAGTTTCCATCAT AGGCCTGTGTTACTGATGAAGATACAGAGTGCCAGGTAATTTAGGTGATTTGTCCTGATCATAT AACTAGTGAGAAAAGAAGCAGGGACTTGAATCTGGGAAACTTGAGTCCATAGCCTGCTTTCTTA TCCAATATGCCAAAAGCCCAGCGGGCAGAAAGCCAGCTTTCCACGAGGTTGTTTTGTTCCTGCT CTTCCCGCAGACTTGTACTTTCCTTCTAGAAAGGTTTAGGCGCTTTGGGCGTGAGAGAGGAGAG CAGGCAGGAGGGTGAGGAGGGTAAAAGGGAGTGGGAAGAAGGGATTTGAAGGAGAGAGCGGGGA AGTCTCGAGGGGATTCCCTAGACCCATAGGGGGCAGCTGGAACCGGCTGCCGGAGGTGCGGGGG CGGAGAAAGGGTGGGGACCGGCCTCGCGGGGGGCGATGCGGTAGCTGCAGCAGCGGCCGCAGGA GTTTCCCACAATGCAGCGCGGCGCGCTGTCCCCGGTGCTGATGCTCAGCGCTGCCCCGGAGCCT CCGCCGCGCCCGCCTCCCGCCCTTTCCCCGCCGGGCCCCGGCCCCCGCCATGGGTCGGCTCGGT CCGTTCCTGCCCCAGAGCCGTCGGGGGGCCTGGGCGCGGCACTCGACAGCAGCTTGCGGGCCGC TGTGGCGTTTAAAGCGGAGGGCCAGCGCTGCTACCGAGAGAAGAAGTTCCGGGAAGCCATCGGC AAGTATCATCGGGCACTGCTGCAGCTGAAGGCGGCGCAGGGGGCCCGCCCTGGAGGCTTGCCCG CCTCCACCTCCGGGCCCGCCACCAGCCCGGGGCCGGCCCGCCTCAGCGAGGAGCAGCGGCGCCT GGTGGAGAACACGGAGGTGGAATGTTATGACTCTCTCACGGCCTGCCTGCTGCAGTCGGAGCTG GTGAACTATGAGCGGGTGCGTGAGTACTGTCTCAAGGTGCTGGAGAAGCAGCAGGGCAACTTCA AGGCTACCTACCGCGCCGGCATTGCCTTCTACCACCTGGGCGACTATGCACGCGCCTTGCGCTA CCTGCAGGAGGCCCGCAGTCGCGAGCCCACAGACACCAATGTCCTGCGCTACATCCAGCTGACT CAGCTGAAGATGAACCGTTGCAGCCTCCAGCGTGAAGACAGTGGGTCTGGGGCCGGGTCTCGGG ATGTCATTGGCTGAGACCAACCTGGGGGAACTGTCCCTATCCCCGCTCCCCCCACCTCATGGTG TAAGTTCCCCTGACTCATGTTTTCCCTGGTAAAGCATCTGTCACTGGTGCCTGGAA
hide sequence
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RefSeq Acc Id: |
XM_021094384 ⟹ XP_020950043 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,549,816 - 48,554,374 (-) | NCBI |
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Sequence: |
ACCACAGCCACAGCAACGCCAGAGCCTTAACCCACTGAGCATGGCCAGGGATCGAACCCACGTC TTCATGGATGCTAGTCGGGCTCGTTAACCACCGAACCAGGACGGCAACTCCACAAGGCAGAATC TTTAATGCATTGACCCACCAGGCAACTCCCTCTTGTCAAGCAAGTTTTTAAATCCCTACTGTTG GGGACGAAAGGGAAGATCAAAGGGCCTGTGTCTGGTCAGATAGTGAGTAGCAGGACAAGGATTT TCTCCAGCTGCCCGTCCTACAGGATTGTGAGGGGGCAGAGCCAGCCTGCGTAACCTTCACCATT GCCTATGCACCTGCCCAGGTGAGGCGCTCAGCGCGCGTGCGCCCTGGCGCTTTTAAAGCACCAA CCTTGACCAGGTTCTCCGCTTCAGCGGGAAGAGGCGGGCGCTTGGCTTGAAAGATGCTGAGTCC AGCTGGCTCCCTCGAGCCAGAGCCTCGGAGCACCCCAGTCCCTGACGGGGTCCCGGCGGGCAGG GGCGTCTCCCCAGGACGCCTGGAGAGGCGGTCGGGGCCGTGCGCGCCGCCGGGGCTGGAGGAGG CTCTGAGCGCGCTGGGGCTGGAGGGGGAACGCGAGTACGCGGGAGACTTCCTCGCGGAAGTCCT GGTGTGCCGCGCGCTGCCCGGGAGGGCCCTGCCGCGCACTGTGACTCCGGAGATGCGCGCGCTA GTGGTGGACTGGCTGGTTCAGGTGCACGAGTACCTGGGCCTGGCGGGGGACACGCTCTACCTGG CCGTGCACCTGCTGGATTCCTACCTGCGCGCGGGCCGAGTGCGCCTACATCGCCTGCAGCTGTT GGGCGTGGCCTGCCTGTTCGTGGCTTGTAAAGTGGAGGAGCGCGTGCTTCCCGAGCCCGCCTCC CTCTGCCTTCTGGGCGATGGGTCCTTTTCGCGGGCCGAGCTTCTGCGCGCGGAGCGCCGCATCC TGAGTCGCTTGGATTTCCGGCTGCACCACCCGGGCCCGCTTCTTTGCCTCGGACTGCTCGCGGC GCTGGCCGGAAGCGGCCCCCAGGTGCTGCGACTTGCCACGTACTTCCTGGAGCTCTCTCTGCTG GAGGCCAAGGCCGCAGGATGGGAACCGGGTCGCCGCGCAGCTGCGGCGCTGAGCTTGGCACACC GGGTGTTCGACGGGGCGGGCTCCGGGCTGGATCCAGCGCTGTACAGCCGGGCGGAGCTGGGCCC GCTGGAGCGGTGCATGGTCCGCGTCGCTCTCCGAGGCCCCGCGCCGGGCCGTGCCGCCATCTTC TTCAAGTACGCACGGCCGCAGCGCCAGGGCACCAGTCTCGCCGCCGCCCGCCTGCTCCGCCACC CTCTGCCCGGGTCTCCCTGAGCCCAGAGACCCCACCAAAAAAAAAGACTCCGTGTGCATCTGTC TTCCACTTCAATAAAAGAGTTTTTATTATTTAGA
hide sequence
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RefSeq Acc Id: |
XM_021094385 ⟹ XP_020950044 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,509,998 - 48,554,374 (-) | NCBI |
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Sequence: |
ACCACAGCCACAGCAACGCCAGAGCCTTAACCCACTGAGCATGGCCAGGGATCGAACCCACGTC TTCATGGATGCTAGTCGGGCTCGTTAACCACCGAACCAGGACGGCAACTCCACAAGGCAGAATC TTTAATGCATTGACCCACCAGGCAACTCCCTCTTGTCAAGCAAGTTTTTAAATCCCTACTGTTG GGGACGAAAGGGAAGATCAAAGGGCCTGTGTCTGGTCAGATAGTGAGTAGCAGGACAAGGATTT TCTCCAGCTGCCCGTCCTACAGGATTGTGAGGGGGCAGAGCCAGCCTGCGTAACCTTCACCATT GCCTATGCACCTGCCCAGGTGAGGCGCTCAGCGCGCGTGCGCCCTGGCGCTTTTAAAGCACCAA CCTTGACCAGGTTCTCCGCTTCAGCGGGAAGAGGCGGGCGCTTGGCTTGAAAGATGCTGAGTCC AGCTGGCTCCCTCGAGCCAGAGCCTCGGAGCACCCCAGTCCCTGACGGGGTCCCGGCGGGCAGG GGCGTCTCCCCAGGACGCCTGGAGAGGCGGTCGGGGCCGTGCGCGCCGCCGGGGCTGGAGGAGG CTCTGAGCGCGCTGGGGCTGGAGGGGGAACGCGAGTACGCGGGAGACTTCCTCGCGGAAGTCCT GGTGTGCCGCGCGCTGCCCGGGAGGGCCCTGCCGCGCACTGTGACTCCGGAGATGCGCGCGCTA GTGGTGGACTGGCTGGTTCAGGTGCACGAGTACCTGGGCCTGGCGGGGGACACGCTCTACCTGG CCGTGCACCTGCTGGATTCCTACCTGCGCGCGGGCCGAGTGCGCCTACATCGCCTGCAGCTGTT GGGCGTGGCCTGCCTGTTCGTGGCTTGTAAAGTGGAGGAGCGCGTGCTTCCCGAGCCCGCCTCC CTCTGCCTTCTGGGCGATGGGTCCTTTTCGCGGGCCGAGCTTCTGCGCGCGGAGCGCCGCATCC TGAGTCGCTTGGATTTCCGGCTGCACCACCCGGGCCCGCTTCTTTGCCTCGGACTGCTCGCGGC GCTGGCCGGAAGCGGCCCCCAGGTGCTGCGACTTGCCACGTACTTCCTGGAGCTCTCTCTGCTG GAGGCCAAGGCCGCAGGATGGGAACCGGGTCGCCGCGCAGCTGCGGCGCTGAGCTTGGCACACC GGGTGTTCGACGGGGCGGGCTCCGGGCTGGATCCAGCGCTGTACAGGGTGTCGCTGGAGTTCTC CTGCTCAGGAACGAATCTGAGGACAGGCAACATCTTGGTGATGCTCCAGACTTTCCGGCTGACT TGGTTTAGAGGACCTGTGGGATGTGCTGAGAAGGAGGACTGGGGAGAGACTTCATGTAGGACAA ATTCATTCTCTCACTGACAAAATATTTACTGAGCACAACCGATGTACTGGGCAGGTCGCCGCGG AGGAGCAACCTGGCCTTGACGCCGCCGCAGC
hide sequence
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RefSeq Acc Id: |
XM_021094386 ⟹ XP_020950045 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,550,070 - 48,554,374 (-) | NCBI |
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Sequence: |
ACCACAGCCACAGCAACGCCAGAGCCTTAACCCACTGAGCATGGCCAGGGATCGAACCCACGTC TTCATGGATGCTAGTCGGGCTCGTTAACCACCGAACCAGGACGGCAACTCCACAAGGCAGAATC TTTAATGCATTGACCCACCAGGCAACTCCCTCTTGTCAAGCAAGTTTTTAAATCCCTACTGTTG GGGACGAAAGGGAAGATCAAAGGGCCTGTGTCTGGTCAGATAGTGAGTAGCAGGACAAGGATTT TCTCCAGCTGCCCGTCCTACAGGATTGTGAGGGGGCAGAGCCAGCCTGCGTAACCTTCACCATT GCCTATGCACCTGCCCAGGTGAGGCGCTCAGCGCGCGTGCGCCCTGGCGCTTTTAAAGCACCAA CCTTGACCAGGTTCTCCGCTTCAGCGGGAAGAGGCGGGCGCTTGGCTTGAAAGATGCTGAGTCC AGCTGGCTCCCTCGAGCCAGAGCCTCGGAGCACCCCAGTCCCTGACGGGGTCCCGGCGGGCAGG GGCGTCTCCCCAGGACGCCTGGAGAGGCGGTCGGGGCCGTGCGCGCCGCCGGGGCTGGAGGAGG CTCTGAGCGCGCTGGGGCTGGAGGGGGAACGCGAGTACGCGGGAGACTTCCTCGCGGAAGTCCT GGTGTGCCGCGCGCTGCCCGGGAGGGCCCTGCCGCGCACTGTGACTCCGGAGATGCGCGCGCTA GTGGTGGACTGGCTGGTTCAGGTGCACGAGTACCTGGGCCTGGCGGGGGACACGCTCTACCTGG CCGTGCACCTGCTGGATTCCTACCTGCGCGCGGGCCGAGTGCGCCTACATCGCCTGCAGCTGTT GGGCGTGGCCTGCCTGTTCGTGGCTTGTAAAGTGGAGGAGCGCGTGCTTCCCGAGCCCGCCTCC CTCTGCCTTCTGGGCGATGGGTCCTTTTCGCGGGCCGAGCTTCTGCGCGCGGAGCGCCGCATCC TGAGTCGCTTGGATTTCCGGCTGCACCACCCGGGCCCGCTTCTTTGCCTCGGACTGCTCGCGGC GCTGGCCGGAAGCGGCCCCCAGGTGCTGCGACTTGCCACGTACTTCCTGGAGCTCTCTCTGCTG GAGGCCAAGGCCGCAGGATGGGAACCGGGTCGCCGCGCAGCTGCGGCGCTGAGCTTGGCACACC GGGTGTTCGACGGGGCGGGCTCCGGGCTGGATCCAGCGCTGTACAGCCGCGCCCTGCGGGAAGA AGCGAGGGTTTGCCCCTCCTCGGCGCTCTCCAATCACCCTAGATGGTGAGCCGCGCGTCCGACC TCGGGAGAGCCCCTGAGCAGTCCTCGGGAACCCAAGTCAATTTGTCTTCTCAGCCTCGAGCCTC AGGCTCCGAGGTCGTCTCTTGTTCCCTGCTACGTCTGCTCCATCCCAGTTTCCCCGTATC
hide sequence
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RefSeq Acc Id: |
XM_021094387 ⟹ XP_020950046 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,546,381 - 48,554,374 (-) | NCBI |
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Sequence: |
ACCACAGCCACAGCAACGCCAGAGCCTTAACCCACTGAGCATGGCCAGGGATCGAACCCACGTC TTCATGGATGCTAGTCGGGCTCGTTAACCACCGAACCAGGACGGCAACTCCACAAGGCAGAATC TTTAATGCATTGACCCACCAGGCAACTCCCTCTTGTCAAGCAAGTTTTTAAATCCCTACTGTTG GGGACGAAAGGGAAGATCAAAGGGCCTGTGTCTGGTCAGATAGTGAGTAGCAGGACAAGGATTT TCTCCAGCTGCCCGTCCTACAGGATTGTGAGGGGGCAGAGCCAGCCTGCGTAACCTTCACCATT GCCTATGCACCTGCCCAGGTGAGGCGCTCAGCGCGCGTGCGCCCTGGCGCTTTTAAAGCACCAA CCTTGACCAGGTTCTCCGCTTCAGCGGGAAGAGGCGGGCGCTTGGCTTGAAAGATGCTGAGTCC AGCTGGCTCCCTCGAGCCAGAGCCTCGGAGCACCCCAGTCCCTGACGGGGTCCCGGCGGGCAGG GGCGTCTCCCCAGGACGCCTGGAGAGGCGGTCGGGGCCGTGCGCGCCGCCGGGGCTGGAGGAGG CTCTGAGCGCGCTGGGGCTGGAGGGGGAACGCGAGTACGCGGGAGACTTCCTCGCGGAAGTCCT GGTGTGCCGCGCGCTGCCCGGGAGGGCCCTGCCGCGCACTGTGACTCCGGAGATGCGCGCGCTA GTGGTGGACTGGCTGGTTCAGGTGCACGAGTACCTGGGCCTGGCGGGGGACACGCTCTACCTGG CCGTGCACCTGCTGGATTCCTACCTGCGCGCGGGCCGAGTGCGCCTACATCGCCTGCAGCTGTT GGGCGTGGCCTGCCTGTTCGTGGCTTGTAAAGTGGAGGAGCGCGTGCTTCCCGAGCCCGCCTCC CTCTGCCTTCTGGGCGATGGGTCCTTTTCGCGGGCCGAGCTTCTGCGCGCGGAGCGCCGCATCC TGAGTCGCTTGGATTTCCGGCTGCACCACCCGGGCCCGCTTCTTTGCCTCGGACTGCTCGCGGC GCTGGCCGGAAGCGGCCCCCAGGTGCTGCGACTTGCCACGTACTTCCTGGAGCTCTCTCTGCTG GAGGCCAAGGCCGCAGGATGGGAACCGGGTCGCCGCGCAGCTGCGGCGCTGAGCTTGGCACACC GGGTGTTCGACGGGGCGGGCTCCGGGCTGGATCCAGCGCTGTACAGCCTGCCTGCTGCAGTCGG AGCTGGTGAACTATGAGCGGGTGCGTGAGTACTGTCTCAAGGTGCTGGAGAAGCAGCAGGGCAA CTTCAAGGCTACCTACCGCGCCGGCATTGCCTTCTACCACCTGGGCGACTATGCACGCGCCTTG CGCTACCTGCAGGAGGCCCGCAG
hide sequence
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RefSeq Acc Id: |
XM_021094388 ⟹ XP_020950047 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 6 | 48,550,070 - 48,554,374 (-) | NCBI |
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Sequence: |
ACCACAGCCACAGCAACGCCAGAGCCTTAACCCACTGAGCATGGCCAGGGATCGAACCCACGTC TTCATGGATGCTAGTCGGGCTCGTTAACCACCGAACCAGGACGGCAACTCCACAAGGCAGAATC TTTAATGCATTGACCCACCAGGCAACTCCCTCTTGTCAAGCAAGTTTTTAAATCCCTACTGTTG GGGACGAAAGGGAAGATCAAAGGGCCTGTGTCTGGTCAGATAGTGAGTAGCAGGACAAGGATTT TCTCCAGCTGCCCGTCCTACAGGATTGTGAGGGGGCAGAGCCAGCCTGCGTAACCTTCACCATT GCCTATGCACCTGCCCAGGTGAGGCGCTCAGCGCGCGTGCGCCCTGGCGCTTTTAAAGCACCAA CCTTGACCAGGTTCTCCGCTTCAGCGGGAAGAGGCGGGCGCTTGGCTTGAAAGATGCTGAGTCC AGCTGGCTCCCTCGAGCCAGAGCCTCGGAGCACCCCAGTCCCTGACGGGGTCCCGGCGGGCAGG GGCGTCTCCCCAGGACGCCTGGAGAGGCGGTCGGGGCCGTGCGCGCCGCCGGGGCTGGAGGAGG CTCTGAGCGCGCTGGGGCTGGAGGGGGAACGCGAGTACGCGGGAGACTTCCTCGCGGAAGTCCT GGTGTGCCGCGCGCTGCCCGGGAGGGCCCTGCCGCGCACTGTGACTCCGGAGATGCGCGCGCTA GTGGTGGACTGGCTGGTTCAGGTGCACGAGTACCTGGGCCTGGCGGGGGACACGCTCTACCTGG CCGTGCACCTGCTGGATTCCTACCTGCGCGCGGGCCGAGTGCGCCTACATCGCCTGCAGCTGTT GGGCGTGGCCTGCCTGTTCGTGGCTTGTAAAGTGGAGGAGCGCGTGCTTCCCGAGCCCGCCTCC CTCTGCCTTCTGGGCGATGGGTCCTTTTCGCGGGCCGAGCTTCTGCGCGCGGAGCGCCGCATCC TGAGTCGCTTGGATTTCCGGCTGCACCACCCGGGCCCGCTTCTTTGCCTCGGACTGCTCGCGGC GCTGGCCGGAAGCGGCCCCCAGGTGCTGCGACTTGCCACGTACTTCCTGGAGCTCTCTCTGCTG GAGGCCAAGGCCGCAGGATGGGAACCGGGTCGCCGCGCAGCTGCGGCGCTGAGCTTGGCACACC GGGTGTTCGACGGGGCGGGCTCCGGGCTGGATCCAGCGCTGTACAGATGGTGAGCCGCGCGTCC GACCTCGGGAGAGCCCCTGAGCAGTCCTCGGGAACCCAAGTCAATTTGTCTTCTCAGCCTCGAG CCTCAGGCTCCGAGGTCGTCTCTTGTTCCCTGCTACGTCTGCTCCATCCCAGTTTCCCCGTATC
hide sequence
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RefSeq Acc Id: |
XP_020950044 ⟸ XM_021094385 |
- Peptide Label: |
isoform X2 |
- Sequence: |
MLSPAGSLEPEPRSTPVPDGVPAGRGVSPGRLERRSGPCAPPGLEEALSALGLEGEREYAGDFL AEVLVCRALPGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHR LQLLGVACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAERRILSRLDFRLHHPGPLLCLG LLAALAGSGPQVLRLATYFLELSLLEAKAAGWEPGRRAAAALSLAHRVFDGAGSGLDPALYRVS LEFSCSGTNLRTGNILVMLQTFRLTWFRGPVGCAEKEDWGETSCRTNSFSH
hide sequence
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RefSeq Acc Id: |
XP_003127187 ⟸ XM_003127139 |
- Peptide Label: |
isoform X6 |
- UniProtKB: |
F1RHC3 (UniProtKB/TrEMBL), A0A4X1SS80 (UniProtKB/TrEMBL) |
- Sequence: |
MQRGALSPVLMLSAAPEPPPRPPPALSPPGPGPRHGSARSVPAPEPSGGLGAALDSSLRAAVAF KAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPGGLPASTSGPATSPGPARLSEEQRRLVEN TEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQE ARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGSGAGSRDVIG
hide sequence
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RefSeq Acc Id: |
XP_020950046 ⟸ XM_021094387 |
- Peptide Label: |
isoform X4 |
- Sequence: |
MLSPAGSLEPEPRSTPVPDGVPAGRGVSPGRLERRSGPCAPPGLEEALSALGLEGEREYAGDFL AEVLVCRALPGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHR LQLLGVACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAERRILSRLDFRLHHPGPLLCLG LLAALAGSGPQVLRLATYFLELSLLEAKAAGWEPGRRAAAALSLAHRVFDGAGSGLDPALYSLP AAVGAGEL
hide sequence
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RefSeq Acc Id: |
XP_020950043 ⟸ XM_021094384 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
A0A4X1SQP4 (UniProtKB/TrEMBL) |
- Sequence: |
MLSPAGSLEPEPRSTPVPDGVPAGRGVSPGRLERRSGPCAPPGLEEALSALGLEGEREYAGDFL AEVLVCRALPGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHR LQLLGVACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAERRILSRLDFRLHHPGPLLCLG LLAALAGSGPQVLRLATYFLELSLLEAKAAGWEPGRRAAAALSLAHRVFDGAGSGLDPALYSRA ELGPLERCMVRVALRGPAPGRAAIFFKYARPQRQGTSLAAARLLRHPLPGSP
hide sequence
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RefSeq Acc Id: |
XP_020950047 ⟸ XM_021094388 |
- Peptide Label: |
isoform X5 |
- Sequence: |
MLSPAGSLEPEPRSTPVPDGVPAGRGVSPGRLERRSGPCAPPGLEEALSALGLEGEREYAGDFL AEVLVCRALPGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHR LQLLGVACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAERRILSRLDFRLHHPGPLLCLG LLAALAGSGPQVLRLATYFLELSLLEAKAAGWEPGRRAAAALSLAHRVFDGAGSGLDPALYRW
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RefSeq Acc Id: |
XP_020950045 ⟸ XM_021094386 |
- Peptide Label: |
isoform X3 |
- Sequence: |
MLSPAGSLEPEPRSTPVPDGVPAGRGVSPGRLERRSGPCAPPGLEEALSALGLEGEREYAGDFL AEVLVCRALPGRALPRTVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLRAGRVRLHR LQLLGVACLFVACKVEERVLPEPASLCLLGDGSFSRAELLRAERRILSRLDFRLHHPGPLLCLG LLAALAGSGPQVLRLATYFLELSLLEAKAAGWEPGRRAAAALSLAHRVFDGAGSGLDPALYSRA LREEARVCPSSALSNHPRW
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Ensembl Acc Id: |
ENSSSCP00000003240 ⟸ ENSSSCT00000003322 |
Additional Information
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