LOC100522141 (tetratricopeptide repeat protein 9B) - Rat Genome Database

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Gene: LOC100522141 (tetratricopeptide repeat protein 9B) Sus scrofa
Analyze
Symbol: LOC100522141 (Ensembl: TTC9B)
Name: tetratricopeptide repeat protein 9B (Ensembl:tetratricopeptide repeat domain 9B)
RGD ID: 13856260
Description: ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CNTD2; cyclin N-terminal domain containing 2; cyclin N-terminal domain-containing protein 2; tetratricopeptide repeat domain 9B; TTC9B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,545,334 - 48,547,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,509,998 - 48,554,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,200,834 - 44,329,821 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100522141
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,545,334 - 48,547,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,509,998 - 48,554,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,200,834 - 44,329,821 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,216,058 - 40,218,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,216,058 - 40,218,384 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,721,965 - 40,724,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,413,805 - 45,416,138 (-)NCBINCBI36Build 36hg18NCBI36
Celera1937,521,518 - 37,523,859 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,156,908 - 37,159,249 (-)NCBIHuRef
CHM1_11940,721,642 - 40,723,983 (-)NCBICHM1_1
T2T-CHM13v2.01943,036,569 - 43,038,895 (-)NCBIT2T-CHM13v2.0
Ttc9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,353,349 - 27,355,632 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,353,340 - 27,356,771 (+)EnsemblGRCm39 Ensembl
GRCm38727,653,924 - 27,656,207 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,653,915 - 27,657,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv37728,438,943 - 28,441,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,362,675 - 27,364,970 (+)NCBIMGSCv36mm8
Celera722,236,080 - 22,238,363 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.95NCBI
Ttc9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,081,026 - 92,083,208 (+)NCBIGRCr8
mRatBN7.2182,953,434 - 82,955,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,953,434 - 82,955,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,356,016 - 88,358,198 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,836,604 - 96,838,792 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,111,879 - 90,114,061 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,470,829 - 84,473,011 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,470,829 - 84,473,011 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,683,938 - 85,686,120 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,748,075 - 82,750,257 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,826,189 - 82,828,330 (+)NCBI
Celera177,359,569 - 77,361,751 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ttc9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555781,015,124 - 1,018,135 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555781,014,670 - 1,018,120 (+)NCBIChiLan1.0ChiLan1.0
TTC9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,475,354 - 46,477,807 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,345,991 - 48,348,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,260,791 - 37,263,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,775,896 - 45,778,427 (-)NCBIpanpan1.1PanPan1.1panPan2
TTC9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,419,556 - 113,422,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,419,715 - 113,422,045 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,821,320 - 112,823,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,018,214 - 114,020,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,018,371 - 114,020,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,577,183 - 113,579,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,209,692 - 113,212,191 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,203,583 - 114,206,063 (+)NCBIUU_Cfam_GSD_1.0
Ttc9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,210,325 - 14,212,666 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,637,189 - 2,640,725 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,638,394 - 2,640,785 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,674,727 - 34,677,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,674,716 - 34,677,153 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607312,767,764 - 12,770,379 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925250,240 - 252,723 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925250,231 - 252,716 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC100522141
589 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 13 11 23 3 4 3

Sequence


Ensembl Acc Id: ENSSSCT00000003322   ⟹   ENSSSCP00000003240
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,545,334 - 48,547,514 (-)Ensembl
RefSeq Acc Id: XM_003127139   ⟹   XP_003127187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,545,331 - 48,549,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094384   ⟹   XP_020950043
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,549,816 - 48,554,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094385   ⟹   XP_020950044
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,509,998 - 48,554,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094386   ⟹   XP_020950045
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,550,070 - 48,554,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094387   ⟹   XP_020950046
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,546,381 - 48,554,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094388   ⟹   XP_020950047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,550,070 - 48,554,374 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020950044   ⟸   XM_021094385
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003127187   ⟸   XM_003127139
- Peptide Label: isoform X6
- UniProtKB: F1RHC3 (UniProtKB/TrEMBL),   A0A4X1SS80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950046   ⟸   XM_021094387
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020950043   ⟸   XM_021094384
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SQP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950047   ⟸   XM_021094388
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020950045   ⟸   XM_021094386
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSSSCP00000003240   ⟸   ENSSSCT00000003322
Protein Domains
Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002991 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015001125 UniProtKB/TrEMBL
  ENSSSCG00025038068 UniProtKB/TrEMBL
  ENSSSCG00030068995 UniProtKB/TrEMBL
  ENSSSCG00035004942 UniProtKB/TrEMBL
  ENSSSCG00040017983 UniProtKB/TrEMBL
  ENSSSCG00045029420 UniProtKB/TrEMBL
  ENSSSCG00050009298 UniProtKB/TrEMBL
  ENSSSCG00055009575 UniProtKB/TrEMBL
  ENSSSCG00060027123 UniProtKB/TrEMBL
  ENSSSCG00065059941 UniProtKB/TrEMBL
  ENSSSCG00070003262 UniProtKB/TrEMBL
  ENSSSCG00070003288 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003322 ENTREZGENE
  ENSSSCT00000003322.5 UniProtKB/TrEMBL
  ENSSSCT00015001302.1 UniProtKB/TrEMBL
  ENSSSCT00025051749.1 UniProtKB/TrEMBL
  ENSSSCT00030096527.1 UniProtKB/TrEMBL
  ENSSSCT00035006216.1 UniProtKB/TrEMBL
  ENSSSCT00040024303.1 UniProtKB/TrEMBL
  ENSSSCT00045050190.1 UniProtKB/TrEMBL
  ENSSSCT00050012545.1 UniProtKB/TrEMBL
  ENSSSCT00055018678.1 UniProtKB/TrEMBL
  ENSSSCT00060036719.1 UniProtKB/TrEMBL
  ENSSSCT00065082090.1 UniProtKB/TrEMBL
  ENSSSCT00070006175.1 UniProtKB/TrEMBL
  ENSSSCT00070006197.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
InterPro AIP/AIPL1/TTC9 UniProtKB/TrEMBL
  Cyclin UniProtKB/TrEMBL
  Cyclin-like_dom UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report ssc:100522141 UniProtKB/TrEMBL
NCBI Gene LOC100522141 ENTREZGENE
PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED UniProtKB/TrEMBL
  CYCLIN-P UniProtKB/TrEMBL
  CYCLINS UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 9B UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  TPR_2 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP Cyclin-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A4X1SQP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SS80 ENTREZGENE, UniProtKB/TrEMBL
  F1RHC3 ENTREZGENE, UniProtKB/TrEMBL