Ttc9b (tetratricopeptide repeat domain 9B)

Gene: Ttc9b (tetratricopeptide repeat domain 9B) Chinchilla lanigera

Analyze

Symbol:

Ttc9b

Name:

tetratricopeptide repeat domain 9B

RGD ID:

8987126

Description:

ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat protein 9B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	1,015,124 - 1,018,135 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	1,014,670 - 1,018,120 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

maple syrup urine disease (ISO)

maturity-onset diabetes of the young type 1 (ISO)

type 2 diabetes mellitus (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Ttc9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955578	1,015,124 - 1,018,135 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955578	1,014,670 - 1,018,120 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	40,216,058 - 40,218,384 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	40,216,058 - 40,218,384 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	40,721,965 - 40,724,291 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	45,413,805 - 45,416,138 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	37,521,518 - 37,523,859 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	37,156,908 - 37,159,249 (-)	NCBI		HuRef
CHM1_1	19	40,721,642 - 40,723,983 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	43,036,569 - 43,038,895 (-)	NCBI		T2T-CHM13v2.0

Ttc9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	27,353,349 - 27,355,632 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	27,353,340 - 27,356,771 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	27,653,924 - 27,656,207 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	27,653,915 - 27,657,346 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	28,438,943 - 28,441,226 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	27,362,675 - 27,364,970 (+)	NCBI		MGSCv36	mm8
Celera	7	22,236,080 - 22,238,363 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	15.95	NCBI

Ttc9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	92,081,026 - 92,083,208 (+)	NCBI		GRCr8
mRatBN7.2	1	82,953,434 - 82,955,659 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	82,953,434 - 82,955,616 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	88,356,016 - 88,358,198 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	96,836,604 - 96,838,792 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	90,111,879 - 90,114,061 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	84,470,829 - 84,473,011 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	84,470,829 - 84,473,011 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	85,683,938 - 85,686,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	82,748,075 - 82,750,257 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	82,826,189 - 82,828,330 (+)	NCBI
Celera	1	77,359,569 - 77,361,751 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

TTC9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	46,475,354 - 46,477,807 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	48,345,991 - 48,348,466 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	37,260,791 - 37,263,267 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	45,775,896 - 45,778,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TTC9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,419,556 - 113,422,057 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,419,715 - 113,422,045 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	112,821,320 - 112,823,816 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,018,214 - 114,020,735 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,018,371 - 114,020,723 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,577,183 - 113,579,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,209,692 - 113,212,191 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,203,583 - 114,206,063 (+)	NCBI		UU_Cfam_GSD_1.0

Ttc9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	14,210,325 - 14,212,666 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,637,189 - 2,640,725 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,638,394 - 2,640,785 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100522141
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	48,545,334 - 48,547,514 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	48,509,998 - 48,554,374 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	44,200,834 - 44,329,821 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC9B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	34,674,727 - 34,677,439 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	34,674,716 - 34,677,153 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	12,767,764 - 12,770,379 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc9b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624925	250,240 - 252,723 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624925	250,231 - 252,716 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01075504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01021853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000686 ⟹ ENSCLAP00000000653

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955578	1,015,124 - 1,018,135 (+)	Ensembl

RefSeq Acc Id:

XM_005414071 ⟹ XP_005414128

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955578	1,014,670 - 1,018,120 (+)	NCBI

Sequence:

show sequence

TTTGTGATCAAGTAACTCTGAGTCTAATGGACGGCATGAAATCACCCATTACAGCACCAGGCCC
TGTGCTAAGCGCTCGTTTTGCACGGTGCTGACCGCCCCCCACCCCGCCACGAGAGGAGCCAGGC
ACAGAGAAAGTATCGGTCCACAGTTGTTTGTGGCATAAACACATGAATGAATTGATAGTACTTC
ACCCATGTTACTGCATATGGAGTTCTAGGTCACGTAAGTGAACAGCCCAAGTACTAGTGAGGGT
ATAAAGAGGGGTTTGAATTTGGGCAGCGTGAGTCCATATTGTTTTCTTATCCAACATGGCAAAT
GGCAGTGGGCTGAAAACCAGCTCTCTACAAAGTTGATACCGTGATGCTCTTTCCCTCAAGCTCA
TTCTTTTCTTCTAGAAATCTTCAGGAGCTTTGGACATGGAGGGGGAGAGCAGGCAGGAGGGTGG
GGACGGTAAGGGGCGTGGGAACAAGGGACAGTTGGCTGGAGAATTAGGGCTAGGGCTGGGGCTG
ATTGGAAGGGGAGCGGGAAAAGTGTTGAGGGGATTCTCTAGACCCATAGGGGGCAGCCGGAGTC
GGCAGCCGGAGGTGCGGGGGCGGAGAAAGGGTGGGGACCGGCCCCGCGGGGGGCGATGCAGTAG
CTGCAGCAGCGGCCGCAGGAGTTTCCCACAATGCAGCGCGGCGCGCTGTCCCCGGTGCTGATGC
TCAGCGCTGCCCCGGAGCCTCCGCCGCGCCCGCCTCCCGCCCTCTCCCCGCCGGGCCCGGGGCC
CCGCCATGGCTCGGCTCGGCCAGGTCCTGCCCCAGAGCCGTCGGGGGGCCTGGCTGCAGCGCTC
GACAGCAGCCTGCGGGCCGCCGTGGCGTTCAAGGCGGAGGGCCAGCGCTGCTACCGAGAGAAGA
AGTTCCGGGAAGCCATCGGCAAGTATCACCGGGCACTGCTGCAGCTGAAGGCGGCACAGGGGGC
CCGCCCTGGCGGCCTGCCCGCCCCCGCCCCCGGGCCCGCCACCAGCCCGGGGCCCGCCCGCCTC
AGCGAGGAGCAGCGGCGCCTGGTGGAGAGCACGGAGGTGGAATGTTACGACTCTCTCACGGCTT
GCCTGCTGCAGTCGGAGCTGGTGAACTACGAGCGCGTTCGCGAGTACTGTCTCAAGGTGCTGGA
GAAGCAGCAGGGCAACTTCAAGGCCACCTACCGCGCCGGCATTGCCTTCTACCACCTGGGCGAC
TACGCACGCGCGCTGCGCTACCTGCAGGAGGCCCGCAGCCGGGAGCCCACAGATACCAACGTGC
TCCGCTACATCCAGCTGACCCAGCTGAAGATGAGCCGCTGCAGCCTCCAGCGGGAAGACAGCGG
GGCTGGGGCCCAGGCCCGGGATGTGGTGGGCTGAGGCAAGGGGCTGCCTGTTCCTGCCCCTCCG
CTCGCGGTGGAACCTCCCCCACTCATGTGTTTGCTGGTAAAGCACTCATCTCTGGTGACCAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414128	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000653
	ENSCLAP00000000653.1

RefSeq Acc Id:

XP_005414128 ⟸ XM_005414071

- UniProtKB:

A0A8C2ULH8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQRGALSPVLMLSAAPEPPPRPPPALSPPGPGPRHGSARPGPAPEPSGGLAAALDSSLRAAVAF
KAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPGGLPAPAPGPATSPGPARLSEEQRRLVES
TEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQE
ARSREPTDTNVLRYIQLTQLKMSRCSLQREDSGAGAQARDVVG

hide sequence

RefSeq Acc Id:

ENSCLAP00000000653 ⟸ ENSCLAT00000000686

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000518	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000686	ENTREZGENE
	ENSCLAT00000000686.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	AIP/AIPL1/TTC9	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_2	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
NCBI Gene	Ttc9b	ENTREZGENE
PANTHER	ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 9B	UniProtKB/TrEMBL
Pfam	TPR_2	UniProtKB/TrEMBL
PROSITE	TPR	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8C2ULH8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar