GYS1 (glycogen synthase 1) - Rat Genome Database

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Pathways
Gene: GYS1 (glycogen synthase 1) Canis lupus familiaris
Analyze
Symbol: GYS1
Name: glycogen synthase 1
RGD ID: 12077911
Description: ENCODES a protein that exhibits alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity (ortholog); D-glucose binding (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); glycogen metabolic process (ortholog); heart development (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH cardiovascular system disease (ortholog); genetic disease (ortholog); Glycogen Storage Disease 0, Muscle (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); inclusion body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycogen [starch] synthase, muscle
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,401,056 - 107,417,273 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,401,114 - 107,417,122 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1106,923,643 - 106,939,864 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01107,925,696 - 107,941,956 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,925,736 - 107,941,952 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,593,280 - 107,609,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,239,619 - 107,255,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,075,233 - 108,091,445 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA)
inclusion body  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GYS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,401,056 - 107,417,273 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,401,114 - 107,417,122 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1106,923,643 - 106,939,864 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01107,925,696 - 107,941,956 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,925,736 - 107,941,952 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,593,280 - 107,609,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,239,619 - 107,255,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,075,233 - 108,091,445 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GYS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,968,130 - 48,993,309 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,968,125 - 48,993,337 (-)Ensemblhg38GRCh38
GRCh371949,471,387 - 49,496,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,163,194 - 54,188,361 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341954,163,194 - 54,188,361NCBI
Celera1946,338,732 - 46,363,941 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,848,297 - 45,873,316 (-)NCBIHuRef
CHM1_11949,473,588 - 49,498,839 (-)NCBICHM1_1
T2T-CHM13v2.01951,963,010 - 51,988,208 (-)NCBIT2T-CHM13v2.0
Gys1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 34934,358,906 - 34,366,863NCBI
GRCm39745,084,263 - 45,106,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,084,268 - 45,106,043 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38745,434,839 - 45,456,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,434,844 - 45,456,619 (+)Ensemblmm10GRCm38
MGSCv37752,690,209 - 52,711,987 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36745,303,088 - 45,324,142 (+)NCBIMGSCv36mm8
Celera740,890,873 - 40,912,666 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.31NCBI
Gys1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,051,916 - 105,071,763 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1105,051,961 - 105,072,419 (+)EnsemblGRCr8
mRatBN7.2195,915,443 - 95,935,292 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,915,443 - 95,935,292 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1101,300,867 - 101,320,722 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,773,545 - 109,793,398 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,063,944 - 103,083,795 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1103,688,581 - 103,708,432 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1108,798,729 - 108,818,578 (+)NCBILyon_Normotensive
Lyon_Hypertensive1105,332,024 - 105,351,875 (+)NCBILyon_Hypertensive
F344_StmMcwi1103,788,684 - 103,808,535 (+)NCBIF344_StmMcwi
Rnor_6.01101,427,195 - 101,447,092 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,427,195 - 101,447,092 (+)Ensemblrn6Rnor6.0
Rnor_5.01102,506,605 - 102,526,038 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,907,458 - 95,928,150 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera190,171,034 - 90,191,204 (+)NCBICelera
Cytogenetic Map1q22NCBI
Gys1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,674,969 - 1,690,098 (+)Ensembl
ChiLan1.0NW_0049555591,674,969 - 1,690,098 (+)NCBIChiLan1.0ChiLan1.0
GYS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,074,039 - 55,099,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,000,160 - 57,025,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,970,127 - 45,995,269 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,761,479 - 54,786,726 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,761,479 - 54,786,726 (+)EnsemblpanPan2panpan1.1
Gys1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,360,345 - 21,376,891 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,980,673 - 2,994,855 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,978,546 - 2,995,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GYS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,233,050 - 54,250,261 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1654,234,600 - 54,250,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,078,446 - 50,094,061 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GYS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,200,487 - 42,227,660 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,200,455 - 42,227,285 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607322,087,124 - 22,110,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gys1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,029,057 - 5,045,190 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248325,029,272 - 5,044,679 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gys1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12154,054,586 - 154,074,513 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in GYS1
193 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000006203   ⟹   ENSCAFP00000005745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1107,401,114 - 107,417,122 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000067530   ⟹   ENSCAFP00000054800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1107,401,114 - 107,417,122 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845000748   ⟹   ENSCAFP00845000550
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1107,925,736 - 107,941,952 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845000761   ⟹   ENSCAFP00845000562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1107,925,736 - 107,941,951 (+)Ensembl
RefSeq Acc Id: XM_038467598   ⟹   XP_038323526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,593,280 - 107,609,500 (+)NCBI
RefSeq Acc Id: XM_038528302   ⟹   XP_038384230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01108,075,233 - 108,091,445 (+)NCBI
RefSeq Acc Id: XM_038592592   ⟹   XP_038448520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01107,239,619 - 107,255,846 (+)NCBI
RefSeq Acc Id: XM_038656383   ⟹   XP_038512311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,925,696 - 107,941,956 (+)NCBI
RefSeq Acc Id: XM_849716   ⟹   XP_854809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,401,056 - 107,417,273 (+)NCBI
Dog10K_Boxer_Tasha1106,923,643 - 106,939,864 (+)NCBI
Sequence:
RefSeq Acc Id: XP_854809   ⟸   XM_849716
- UniProtKB: A0A8C0LLH5 (UniProtKB/TrEMBL),   A0A8C0NDX9 (UniProtKB/TrEMBL),   A0A8I3MKP1 (UniProtKB/TrEMBL),   A0A8C0R891 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000005745   ⟸   ENSCAFT00000006203
Ensembl Acc Id: ENSCAFP00000054800   ⟸   ENSCAFT00000067530
RefSeq Acc Id: XP_038323526   ⟸   XM_038467598
RefSeq Acc Id: XP_038448520   ⟸   XM_038592592
RefSeq Acc Id: XP_038512311   ⟸   XM_038656383
- UniProtKB: A0A8C0LLH5 (UniProtKB/TrEMBL),   A0A8C0NDX9 (UniProtKB/TrEMBL),   A0A8I3MKP1 (UniProtKB/TrEMBL),   A0A8C0R891 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384230   ⟸   XM_038528302
- UniProtKB: A0A8C0LLH5 (UniProtKB/TrEMBL),   A0A8C0NDX9 (UniProtKB/TrEMBL),   A0A8C0R891 (UniProtKB/TrEMBL),   A0A8I3MKP1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845000550   ⟸   ENSCAFT00845000748
Ensembl Acc Id: ENSCAFP00845000562   ⟸   ENSCAFT00845000761


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003858 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014382 UniProtKB/TrEMBL
  ENSCAFG00040000567 UniProtKB/TrEMBL
  ENSCAFG00845000463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006203.5 UniProtKB/TrEMBL
  ENSCAFT00000067530.2 UniProtKB/TrEMBL
  ENSCAFT00030026655.1 UniProtKB/TrEMBL
  ENSCAFT00030026805.1 UniProtKB/TrEMBL
  ENSCAFT00030026903.1 UniProtKB/TrEMBL
  ENSCAFT00040000994.1 UniProtKB/TrEMBL
  ENSCAFT00040001025.1 UniProtKB/TrEMBL
  ENSCAFT00845000748.1 UniProtKB/TrEMBL
  ENSCAFT00845000761 ENTREZGENE
  ENSCAFT00845000761.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.260.10 UniProtKB/TrEMBL
  Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro Glycogen_synth UniProtKB/TrEMBL
NCBI Gene GYS1 ENTREZGENE
PANTHER GLYCOGEN [STARCH] SYNTHASE, MUSCLE UniProtKB/TrEMBL
  PTHR10176 UniProtKB/TrEMBL
Pfam Glycogen_syn UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A8C0LLH5 ENTREZGENE
  A0A8C0NDX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NH17_CANLF UniProtKB/TrEMBL
  A0A8C0R891 ENTREZGENE
  A0A8C0RK81_CANLF UniProtKB/TrEMBL
  A0A8I3MKN1_CANLF UniProtKB/TrEMBL
  A0A8I3MKP1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41574 ENTREZGENE