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Gene: ST6GALNAC2 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2) Pan paniscus

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Symbol:

ST6GALNAC2

Name:

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2

RGD ID:

11886548

Description:

ENCODES a protein that exhibits alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity (inferred); glycosyltransferase activity (inferred); sialyltransferase activity (inferred); INVOLVED IN protein sialylation (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); IgA glomerulonephritis (ortholog); FOUND IN Golgi membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,608,045 - 92,629,394 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,433,042 - 97,454,406 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,513,376 - 70,534,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,204,947 - 76,226,088 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,204,947 - 76,226,088 (-)	Ensembl			panPan2	panpan1.1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol use disorder (ISO)

IgA glomerulonephritis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycoprotein biosynthetic process (IEA)

protein O-linked glycosylation (IEA)

protein sialylation (ISO)

Cellular Component

Golgi membrane (IEA)

Molecular Function

alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity (IEA)

glycosyltransferase activity (IEA)

sialyltransferase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ST6GALNAC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,608,045 - 92,629,394 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,433,042 - 97,454,406 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,513,376 - 70,534,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,204,947 - 76,226,088 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,204,947 - 76,226,088 (-)	Ensembl			panPan2	panpan1.1

ST6GALNAC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	76,565,377 - 76,585,860 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	76,565,377 - 76,586,956 (-)	Ensembl			hg38	GRCh38
GRCh37	17	74,561,459 - 74,581,942 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	72,073,056 - 72,093,524 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	72,073,076 - 72,093,524	NCBI
Celera	17	71,153,785 - 71,174,495 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,989,012 - 70,009,612 (-)	NCBI		HuRef
CHM1_1	17	74,626,402 - 74,647,103 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,462,123 - 77,482,592 (-)	NCBI		T2T-CHM13v2.0

St6galnac2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,567,529 - 116,586,608 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,568,309 - 116,572,116 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	11	116,566,129 - 116,585,694 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	116,676,703 - 116,695,782 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,675,303 - 116,694,868 (-)	Ensembl			mm10	GRCm38
GRCm38.p6 Ensembl	11	116,677,483 - 116,681,290 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	116,538,019 - 116,555,974 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,483,074 - 116,510,702 (-)	NCBI		MGSCv36	mm8
Celera	11	128,448,149 - 128,466,102 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.49	NCBI

St6galnac2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,409,048 - 102,427,299 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	102,409,048 - 102,427,137 (-)	Ensembl				GRCr8
mRatBN7.2	10	101,910,220 - 101,928,412 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	101,910,222 - 101,927,933 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	10	101,909,971 - 101,915,008 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	106,967,408 - 106,985,027 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,430,500 - 106,448,119 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,831,087 - 101,848,796 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	105,552,920 - 105,570,633 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	106,280,989 - 106,298,702 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	107,726,885 - 107,744,602 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	107,842,102 - 107,859,815 (-)	NCBI		F344_StmMcwi
Rnor_6.0	10	105,650,866 - 105,668,579 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	105,650,862 - 105,668,593 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	105,313,761 - 105,331,475 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	106,793,126 - 106,811,346 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	100,481,789 - 100,499,452 (-)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

St6galnac2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	5,720,930 - 5,741,294 (+)	Ensembl
ChiLan1.0	NW_004955506	5,720,569 - 5,743,803 (+)	NCBI	ChiLan1.0	ChiLan1.0

ST6GALNAC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,154,685 - 4,165,054 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,152,689 - 4,165,416 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	4,831,482 - 4,846,448 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,826,061 - 4,841,661 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	4,825,413 - 4,841,661 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	4,851,364 - 4,866,297 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	4,971,257 - 4,986,179 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	5,052,356 - 5,067,303 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

St6galnac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	4,758,770 - 4,774,918 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	1,635,770 - 1,653,103 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	1,637,041 - 1,653,178 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST6GALNAC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	4,938,663 - 4,954,246 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	4,938,669 - 4,954,660 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,790,373 - 4,805,956 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ST6GALNAC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,091,047 - 45,112,056 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	45,091,127 - 45,116,378 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	15,831,858 - 15,853,353 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St6galnac2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	6,418,793 - 6,427,290 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	6,417,416 - 6,434,848 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

St6galnac2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	67,376,938 - 67,393,910 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000040511 ⟹ ENSPPAP00000017795

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	76,204,947 - 76,226,088 (-)	Ensembl

RefSeq Acc Id:

XM_003818300 ⟹ XP_003818348

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	92,608,045 - 92,629,394 (-)	NCBI
NHGRI_mPanPan1	17	97,433,042 - 97,454,406 (-)	NCBI
Mhudiblu_PPA_v0	17	70,513,376 - 70,534,277 (-)	NCBI
PanPan1.1	17	76,204,947 - 76,226,088 (-)	NCBI

Sequence:

show sequence

ACCCACCCCGGCCTCTCCCTTCTGCCTGGGACGTCAGCGGACGGGGCGCTCGCGGGCCGGGGCT
GTATGGGGCTCCCGCGCGGGTCGTTCTTCTGGCTGCTGCTCCTGCTCACGGCTGCCTGCTCGGG
GCTCCTCTTTGCCCTGTACTTCTCGGCGGTGCAGCGGTACCCGGGGCCAGCGGCCGGAGCCAGG
GACACCACATCATTTGAAGCATTCTTTCAATCCAAGCCATCGAATTCTTGGACAGGAAAGGGCC
AGGCCTGCCGACACCTGCTTCACCTGGCCATTCAGCGGCACCCCCACTTCCGTGGCCTGTTCAA
TCTCTCCATTCCAGTGCTGCTGTGGGGGGACCTCTTCACCCCAGCGCTCTGGGACCGCCTGAGC
CAACACAAAGCCCCGTATGGCTGGCGGGGGCTCTCTCACCAAGTCATCGCCTCCACCCTGAGCC
TTCTGAACGGCTCAGAGAGTGCCAAGCTGTTGGCCCCGCCCAGGGACACCCCTCCAAAGTGTAT
CCGGTGTGCCGTGGTGGGCAACGGAGGCATTCTGAATGGGTCCCGCCAGGGTCCCAACATCGAT
GCCCATGACTATGTATTCAGACTCAATGGAGCTGTGATCAAAGGCTTCGAGCGCGATGTGGGCA
CCAAGACTTCCTTCTACGGTTTCACTGTGAACACGATGAAGAACTCCCTCGTCTCCTACTGGAA
CCTGGGCTTTACCTCCGTGCCACAAGGACAGGACCTGCAGTATATCTTCATCCCCTCAGACATC
CGCGACTATGTGATGCTGAGATCGGCCATTCTGGGCGTGCCTGTCCCTGAGGGCCTAGATAAAG
GGGACAGGCCGCACACCTATTTTGGACCAGAAGCCTCTGCCAGTAAATTCAAGCTGCTACACCC
GGACTTCATCAGCTACCTGACAGAAAGGTTCTTGAAATCAAAGTTGATTAACACAAATTTTGGA
GACCTATATATGCCTAGTACCGGGGCTCTCATGCTGCTGACAGCTTTGCATACCTGTGACCAGG
TCAGTGCCTATGGATTCATCACAAGCAACTACTGGAAATTTTCCGACCACTATTTCGAACGAAA
AATGAAGCCACTGATATTTTATGCAAACCACGATCTGTCCCTGGAAGCTGCCCTGTGGAGGGAC
CTGCACAAGGCCGGCATCCTTCAGCTGTACCAGCGCTGACCCCAAGGCACTGAGCCCTTTGCTT
CTTCAAGAGTTGCGGCCCTGATCCTCTCAAGTGGCCAAAAGCTTTTTTAACTTTTCAATCTTCA
CCTTCCCTTCTTGCCAACAGAAGGCACTGGGGTGAATTCAAGATTTTCATCGAGGTCTGTTCAA
TATAGGACACCCCAGCTTGTCCTTGGCTCATCCAAGAACTCTTCTGTATCTAAAACAATACATC
TCAATCTTGGCCAAGGGAAAATGGACTGCTTTGCTGGATTGGCCCTGAGCAACTTTAGGAAATG
TCGGTGGAGTGTTCAGCAAGATCAGACAGCAGTCCAGGTCAAAGGCAAACACACACGCTCCAGC
CCAAATCCTCCTTGTGGCACATCCTACCCCAGAGGCTAAAGTGATTCAAGGACTCCAGGACACC
TCTTAAGAGCCTTTCTAAGAACATGATAGGCTTACTTCTGCTCCATAATAAAGTGGGAGAAAAA
AGCCAGAATATAACTTAAGACTAGATAACTGCGTACATGATGGACCATTTTTTTTTGGCTGGGT
AGAGAAATCACATAAAACGCAGGCTGTTTAGCATGGAGATGACTCTCAGAACACTGGGAGCGTC
TGGCACTTGATGGGGGTTAGTTGCTTGGCAGCCTGCCTGCCACCGAGGGAAGTCCCATTAGAGA
TGTATCACCACCTTATCACCAACAGGATGATGTCACCAGGTAATAAACCTTCATCCTCATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003818348	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000017795.1
	ENSPPAP00050034748

RefSeq Acc Id:

XP_003818348 ⟸ XM_003818300

- UniProtKB:

A0A2R9APX9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKPSNSWTGKGQ
ACRHLLHLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQVIASTLSL
LNGSESAKLLAPPRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGT
KTSFYGFTVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKG
DRPHTYFGPEASASKFKLLHPDFISYLTERFLKSKLINTNFGDLYMPSTGALMLLTALHTCDQV
SAYGFITSNYWKFSDHYFERKMKPLIFYANHDLSLEAALWRDLHKAGILQLYQR

hide sequence

Ensembl Acc Id:

ENSPPAP00000017795 ⟸ ENSPPAT00000040511

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032008	Ensembl, UniProtKB/TrEMBL
	ENSPPAG00050025051	ENTREZGENE
Ensembl Transcript	ENSPPAT00000040511.1	UniProtKB/TrEMBL
	ENSPPAT00050053410	ENTREZGENE
Gene3D-CATH	3.90.1480.20	UniProtKB/TrEMBL
InterPro	Glyco_trans_29	UniProtKB/TrEMBL
	GT29-like_sf	UniProtKB/TrEMBL
	Sialyl_trans	UniProtKB/TrEMBL
KEGG Report	pps:100991286	UniProtKB/TrEMBL
NCBI Gene	ST6GALNAC2	ENTREZGENE
PANTHER	ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 2	UniProtKB/TrEMBL
	PTHR45941	UniProtKB/TrEMBL
Pfam	Glyco_transf_29	UniProtKB/TrEMBL
PIRSF	Sialyl_trans	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
UniProt	A0A2R9APX9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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