St6galnac2 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2) - Rat Genome Database

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Gene: St6galnac2 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2) Chinchilla lanigera
Analyze
Symbol: St6galnac2
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
RGD ID: 8871679
Description: ENCODES a protein that exhibits alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity (ortholog); INVOLVED IN protein glycosylation (ortholog); protein O-linked glycosylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); IgA glomerulonephritis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,720,930 - 5,741,294 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,720,569 - 5,743,803 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
St6galnac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,720,930 - 5,741,294 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,720,569 - 5,743,803 (+)NCBIChiLan1.0ChiLan1.0
ST6GALNAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,565,377 - 76,585,860 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,565,377 - 76,586,956 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,561,459 - 74,581,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,073,056 - 72,093,524 (-)NCBINCBI36Build 36hg18NCBI36
Build 341772,073,076 - 72,093,524NCBI
Celera1771,153,785 - 71,174,495 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,989,012 - 70,009,612 (-)NCBIHuRef
CHM1_11774,626,402 - 74,647,103 (-)NCBICHM1_1
T2T-CHM13v2.01777,462,123 - 77,482,592 (-)NCBIT2T-CHM13v2.0
St6galnac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,567,529 - 116,586,608 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,568,309 - 116,572,116 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl11116,566,129 - 116,585,694 (-)EnsemblGRCm39 Ensembl
GRCm3811116,676,703 - 116,695,782 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,675,303 - 116,694,868 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,677,483 - 116,681,290 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,538,019 - 116,555,974 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,483,074 - 116,510,702 (-)NCBIMGSCv36mm8
Celera11128,448,149 - 128,466,102 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.49NCBI
St6galnac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,409,048 - 102,427,299 (-)NCBIGRCr8
mRatBN7.210101,910,220 - 101,928,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,910,222 - 101,927,933 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl10101,909,971 - 101,915,008 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,967,408 - 106,985,027 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,430,500 - 106,448,119 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,831,087 - 101,848,796 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,650,866 - 105,668,579 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,650,862 - 105,668,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,313,761 - 105,331,475 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,793,126 - 106,811,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10100,481,789 - 100,499,452 (-)NCBICelera
Cytogenetic Map10q32.2NCBI
ST6GALNAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,608,045 - 92,629,394 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,433,042 - 97,454,406 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,513,376 - 70,534,277 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,204,947 - 76,226,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,204,947 - 76,226,088 (-)Ensemblpanpan1.1panPan2
ST6GALNAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,154,685 - 4,165,054 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,152,689 - 4,165,416 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,831,482 - 4,846,448 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,826,061 - 4,841,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,825,413 - 4,841,661 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,851,364 - 4,866,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,971,257 - 4,986,179 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,052,356 - 5,067,303 (+)NCBIUU_Cfam_GSD_1.0
St6galnac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,758,770 - 4,774,918 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,635,770 - 1,653,103 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,637,041 - 1,653,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,938,663 - 4,954,246 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,938,669 - 4,954,660 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,790,373 - 4,805,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST6GALNAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,091,047 - 45,112,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,091,127 - 45,116,378 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,831,858 - 15,853,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St6galnac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,418,793 - 6,427,290 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,417,416 - 6,434,848 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015139   ⟹   ENSCLAP00000014980
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555065,720,930 - 5,741,294 (+)Ensembl
RefSeq Acc Id: XM_005407425   ⟹   XP_005407482
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555065,720,569 - 5,743,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506078   ⟹   XP_013361532
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555065,720,571 - 5,743,803 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407482 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014980
  ENSCLAP00000014980.1
Reference Protein Sequences
RefSeq Acc Id: XP_005407482   ⟸   XM_005407425
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VMY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361532   ⟸   XM_013506078
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000014980   ⟸   ENSCLAT00000015139


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015139 ENTREZGENE
  ENSCLAT00000015139.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene St6galnac2 ENTREZGENE
PANTHER ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 2 UniProtKB/TrEMBL
  PTHR45941 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A8C2VMY8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 St6galnac2  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2    ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2  Symbol and/or name change 5135510 APPROVED