| 1307421 | Foxi1 | forkhead box I1 | ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (ortholog); INTERACTS WITH bisphenol A; copper atom; copper(0) | 10 | 19310466 | 19314405 | Rat | 82 | symbol , PhenoGen | gene, protein-coding, PROVISIONAL [RefSeq] |
| 1316609 | FOXI1 | forkhead box I1 | This gene belongs to the forkhead family of transcription factors, which is characterized by a distinct forkhead domain. This gene may play an important role in the development of the cochlea and vestibulum, as well as in embryogenesis. The encoded protein has been found to be required for the trans cription of four subunits of a proton pump found in the inner ear, the kidney, and the epididymis. Mutations in this gene have been associated with deafness, autosomal recessive 4. [provided by RefSeq, Jan 2017] | 5 | 170105897 | 170109737 | Human | 121 | symbol , COSMIC , Human Proteome Map | gene, protein-coding, REVIEWED [RefSeq] |
| 1316610 | Foxi1 | forkhead box I1 | Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within inner ear morphogenesis. Predicted to be located in nucleolus. Is expressed in several structures, including alimentary system; metanephros; nervous system; sensory organ; and skeleton. Used to study Pendred Syndrome. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 4. Orthologous to human FOXI1 (forkhead box I1). [provided by Alliance of Genome Resources, Jul 2025] | 11 | 34154341 | 34158089 | Mouse | 112 | symbol , PhenoGen , description | gene, protein-coding, VALIDATED [RefSeq] |
| 9060195 | Foxi1 | forkhead box I1 | ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (ortholog) | NW_004955408 | 23074876 | 23078766 | Chinchilla | 21 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 11714394 | FOXI1 | forkhead box I1 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred) | 5 | 165468600 | 165473088 | Bonobo | 31 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 12270684 | FOXI1 | forkhead box I1 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred) | 4 | 41760899 | 41764887 | Dog | 32 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 12656167 | Foxi1 | forkhead box I1 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred) | NW_004936609 | 4667425 | 4694259 | Squirrel | 32 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 18579555 | FOXI1 | forkhead box I1 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred) | | | | Green Monkey | 31 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 155237545 | foxi1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 18903266 | Foxi1 | forkhead box I1 | ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation o f DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (ortholog) | | | | Naked Mole-Rat | 31 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 625993283 | Foxi1 | forkhead box I1 | ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (ortholog) | | | | Black Rat | 21 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 14130467 | FOXI1 | forkhead box I1 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred) | | | | Pig | 33 | symbol | gene, protein-coding, MODEL [RefSeq] |
| 155237546 | foxi1.L | | | | | | African Clawed Frog | | symbol | gene, null |
| 155255735 | foxi1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 1561816 | Foxi3 | forkhead box I3 | ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN epidermal cell fate specification (ortholog); hair follicle development (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH Clouston syndrome (or tholog); Craniofacial Microsomia 2 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH bisphenol A; 4,4'-sulfonyldiphenol (ortholog); arsane (ortholog) | 4 | 104491834 | 104496008 | Rat | 47 | old_gene_name | gene, protein-coding, VALIDATED [RefSeq] |