Foxi1 (forkhead box I1) - Rat Genome Database

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Gene: Foxi1 (forkhead box I1) Heterocephalus glaber
Analyze
Symbol: Foxi1
Name: forkhead box I1
RGD ID: 18903266
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN inner ear morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 4 (ortholog); Craniofacial Abnormalities (ortholog); Hearing Loss (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Forkhead box protein I1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473319,859,972 - 19,864,359 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473319,860,586 - 19,864,522 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Foxi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473319,859,972 - 19,864,359 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473319,860,586 - 19,864,522 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FOXI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,105,897 - 170,109,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,105,897 - 170,109,734 (+)EnsemblGRCh38hg38GRCh38
GRCh375169,532,901 - 169,536,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365169,465,495 - 169,469,307 (+)NCBINCBI36Build 36hg18NCBI36
Build 345169,465,494 - 169,469,302NCBI
Celera5165,564,551 - 165,568,363 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,630,964 - 164,634,777 (+)NCBIHuRef
CHM1_15168,965,387 - 168,969,200 (+)NCBICHM1_1
T2T-CHM13v2.05170,644,375 - 170,648,215 (+)NCBIT2T-CHM13v2.0
Foxi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,154,341 - 34,158,089 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,154,338 - 34,158,089 (-)EnsemblGRCm39 Ensembl
GRCm381134,204,341 - 34,208,089 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,204,338 - 34,208,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,104,341 - 34,108,089 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,104,341 - 34,108,089 (-)NCBIMGSCv36mm8
Celera1136,615,688 - 36,619,447 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.65NCBI
Foxi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,310,466 - 19,314,405 (-)NCBIGRCr8
mRatBN7.21018,806,292 - 18,810,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,806,308 - 18,810,231 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1023,561,038 - 23,564,983 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01023,049,575 - 23,053,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01018,529,590 - 18,533,542 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01019,160,566 - 19,164,505 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1019,160,582 - 19,164,505 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01019,039,086 - 19,043,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41019,185,917 - 19,189,856 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11019,188,079 - 19,190,836 (-)NCBI
Celera1018,438,984 - 18,442,923 (-)NCBICelera
Cytogenetic Map10q12NCBI
Foxi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,074,850 - 23,078,815 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,074,876 - 23,078,766 (+)NCBIChiLan1.0ChiLan1.0
FOXI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,265,610 - 165,271,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,405,187 - 163,410,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,468,600 - 165,473,088 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,228,840 - 172,232,692 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,228,840 - 172,232,692 (+)Ensemblpanpan1.1panPan2
FOXI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,760,899 - 41,764,887 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,761,016 - 41,764,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha441,713,210 - 41,717,202 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,137,160 - 42,141,152 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl442,137,277 - 42,141,393 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,954,224 - 41,958,215 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,141,176 - 42,145,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,652,030 - 42,656,023 (-)NCBIUU_Cfam_GSD_1.0
Foxi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,944,423 - 95,948,631 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366094,667,425 - 4,669,746 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366094,667,425 - 4,694,259 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1653,835,399 - 53,839,187 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11653,835,350 - 53,839,185 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,331,419 - 58,335,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,319,377 - 72,324,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2372,321,483 - 72,325,532 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660346,337,152 - 6,342,295 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020057   ⟹   ENSHGLP00000019858
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473319,859,972 - 19,864,359 (-)Ensembl
RefSeq Acc Id: XM_004836397   ⟹   XP_004836454
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473319,860,586 - 19,864,522 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04077 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019858
RefSeq Acc Id: XP_004836454   ⟸   XM_004836397
- UniProtKB: G5B466 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019858   ⟸   ENSHGLT00000020057


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014218 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020057 ENTREZGENE
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOX_domain-containing UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report hgl:101706412 UniProtKB/TrEMBL
NCBI Gene Foxi1 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/TrEMBL
  PTHR11829:SF180 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt G5B466 ENTREZGENE, UniProtKB/TrEMBL