rs878855058 Rat Genome Database
Welcome
Sign In
Message Center
1 Messages
Go to Message Center
Watched Genes
Watched Ontology Terms
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
Subscribe to Updates
Select categories you would like to watch. Updates to this gene will be sent to Sign In
Analyze List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailable
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants)
unavailable
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
Summary
Annotation
ClinVar Data
Imported Disease - ClinVar
Variant Details
Variant Samples
PubMed References
Additional Information
External Database Links
Variant: rs878855058 - Homo sapiens
RGD ID:
11347633
RS ID:
rs878855058
ClinVar ID:
CV238594
Genic Status:
GENIC
Type:
deletion
(SO:0000159)
Associated Genes:
ALS2
Reference Nucleotide:
CTCT
Variant Nucleotide:
-
Position
Assembly
Chr
Position
GRCh37
2
202,622,169 - 202,622,173
GRCh38
2
201,757,446 - 201,757,450
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
ClinVar Data
HGVS Name(s)
Last Evaluated
Molecular Consequence
Clinical Significance
Age of Onset
Prevalence
Trait Synonyms
NC_000002.11:g.202622168_202622171del
NM_020919.4:c.1425_1428del
NM_020919.3:c.1425_1428delAGAG
NP_065970.2:p.Gly477fs
LRG_654t1:c.1425_1428del
NC_000002.12:g.201757445_201757448del
NG_008775.1:g.28725_28728del
LRG_654:g.28725_28728del
LRG_654p1:p.Gly477fs
More...
10/22/2022
frameshift variant
pathogenic
infancy|neonatal
<1 / 1 000 000
Autosomal Recessive Juvenile Amyotrophic Lateral Sclerosis; Spastic paralysis, infantile onset ascending
Imported Disease Annotations - ClinVar
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CV238594
Human
Hereditary Spastic Paralysis, Infantile Onset Ascending
IAGP
8554872
ClinVar Annotator: match by term: Infantile-onset ascending hereditary spastic paralysis
ClinVar
PMID:11586298
more ...
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Disease Annotations
Click to see Annotation Summary View
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Hereditary Spastic Paralysis, Infantile Onset Ascending
(IAGP)
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Variant Details
.
Variant Samples
1 to 1 of 1 rows
10
20
30
40
100
All Rows
ClinVar GRCh37
ClinVar GRCh38
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Additional References at PubMed
1 to 1 of 1 rows
10
20
30
40
100
All Rows
PMID:
11586298
PMID:
24315819
PMID:
25302125
PMID:
28492532
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Additional Information
External Database Links
1 to 6 of 6 rows
3
5
10
20
40
100
All Rows
Database
Acc Id
Source(s)
ClinVar
RCV000232793
CLINVAR
dbSNP (RS)
rs878855058
CLINVAR
MedGen
C2931441
CLINVAR
NCBI Gene
ALS2
CLINVAR
OMIM
606352
CLINVAR
607225
CLINVAR
1 to 6 of 6 rows
3
5
10
20
40
100
All Rows