Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.SHR-(D9Rat7-D9Mco93)/Mco

Symbol: SS.SHR-(D9Rat7-D9Mco93)/Mco
Strain: SS.SHR-(D9Rat7-D9Mco93)
Substrain: Mco
RGD ID: 2303153
Citation ID: RRID:RGD_2303153
Ontology ID: RS:0002203
Also Known As: SS.SHR-(D9Uia6-D9Mco93)/Mco; SS.SHR-(D9Rat7-D9Mco93)/Mco; SS.SHR-(D9Uia6-D9Mco93)/Mco;S.SHR(9)x10A
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio
Description: This is a congenic substrain developed by crossing SS.SHR-(D9Wox16-D9Rat64)/Mco to SS/Jr to get F2 which were again crossed with SS/Jr to duplicate the recombinant region
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,271,511 - 91,616,855RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0983,686,153 - 98,164,303RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0983,451,810 - 97,845,437RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4977,170,797 - 90,249,887RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Blood pressure and proteinuria effects of multiple quantitative trait loci on rat chromosome 9 that differentiate the spontaneously hypertensive rat from the Dahl salt-sensitive rat. Toland EJ, etal., J Hypertens. 2008 Nov;26(11):2134-41.

Region

Position Markers

Flank 1 / 1 (D9Uia6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2979,271,511 - 79,271,759 (+)MAPPER
Rnor_6.0983,686,153 - 83,686,404NCBI
Rnor_5.0983,451,810 - 83,452,061UniSTS
RGSC_v3.4977,170,797 - 77,171,049RGD
RGSC_v3.4977,170,798 - 77,171,049UniSTS
RGSC_v3.1977,354,082 - 77,354,334RGD
Celera976,786,573 - 76,786,824UniSTS
Cytogenetic Map9 RGD

Flank 2 / 1 (D9Mco93)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,616,614 - 91,616,855 (+)MAPPER
Rnor_6.0998,164,065 - 98,164,303NCBI
Rnor_5.0997,845,199 - 97,845,437UniSTS
RGSC_v3.4990,249,649 - 90,249,887UniSTS
Celera989,159,614 - 89,159,852UniSTS
Cytogenetic Map9 RGD
Strain QTL Data
Symbol Name Trait
Bp334 Blood pressure QTL 334 arterial blood pressure trait   (VT:2000000)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Rat7-D9Mco93)/Mco    Name updated 68913 APPROVED
2013-08-28 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Rat7-D9Mco93)/Mco    Name updated 68913 APPROVED
2012-10-08 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Uia6-D9Mco93)/Mco    Name updated 68913 APPROVED
2012-10-08 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Uia6-D9Mco93)/Mco    Name updated 68913 APPROVED
2012-10-08 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Uia6-D9Mco93)/Mco    Symbol updated 68687 APPROVED
2012-10-08 SS.SHR-(D9Rat7-D9Mco93)/Mco    SS.SHR-(D9Uia6-D9Mco93)/Mco    Symbol updated 68687 APPROVED