rs56164115 Rat Genome Database

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Variant: rs56164115 -  Homo sapiens

RGD ID: 151286153
RS ID: rs56164115
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: COL6A4P1  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh38 3 15,169,269
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs56164115Humanprotein measurement  IAGP 405850206 GWAS_CATALOGPMID:32778093
GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS853246_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals T 0.01394 3E-8 7.523 rs56164115 0.1597 protein measurement (EFO:0004747)
 PMID:32778093

Variant Details
Variant Transcripts
Gene Symbol:COL6A4P1
Accession:NR_027927
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST011427 GWAS Catalog