GWAS853246_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS853246_H (protein measurement QTL GWAS853246 (human)) Homo sapiens

Symbol: GWAS853246_H
Name: protein measurement QTL GWAS853246 (human)
RGD ID: 407204270
Trait: protein measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38315,169,269 - 15,169,270RGD_MAPPER_PIPELINEGRCh38
GRCh37315,210,776 - 15,210,777RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS853246_HHumanprotein measurement  IAGPrs56164115405850206 GWAS_CATALOGPMID:32778093
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2311268COL6A4P1collagen type VI alpha 4 pseudogene 131516536215205959Human

Position Markers

Peak: (rs56164115)
Human AssemblyChrPosition (strand)Source
GRCh38315,169,269 - 15,169,270RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407204270GWAS853246_Hprotein measurement QTL GWAS853246 (human)3e-08protein measurement31516926915169270Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS853246_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals T 0.01394 3E-8 7.523 rs56164115 0.1597 protein measurement (EFO:0004747)
 PMID:32778093
Database Acc Id Source(s)
GWAS Catalog GCST011427 GWAS Catalog

RGD Curation Notes
Note Type Note Reference