rs28890012 Rat Genome Database

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Variant: rs28890012 -  Homo sapiens

RGD ID: 406241387
RS ID: rs28890012
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: GALNTL6  
Reference Nucleotide: A
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 4 172,992,880
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs28890012Humaneducational attainment  IAGP 405850206 GWAS_CATALOGPMID:35361970
GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS669602_H GCST90105038 Educational attainment 3,037,499 European ancestry individuals A 0.8207 8E-10 9.097 rs28890012 0.00866891 educational attainment (EFO:0011015)
 PMID:35361970

Variant Details
Variant Transcripts
Gene Symbol:GALNTL6
Accession:XM_011531996
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_017008243
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_011531994
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_011531995
Location:INTRON

Gene Symbol:GALNTL6
Accession:NM_001034845
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_011531993
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_011531997
Location:INTRON

Gene Symbol:GALNTL6
Accession:XM_017008244
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90105038 GWAS Catalog