GWAS1779597_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1779597_H (total cholesterol measurement, blood VLDL cholesterol amount QTL GWAS1779597 (human)) Homo sapiens

Symbol: GWAS1779597_H
Name: total cholesterol measurement, blood VLDL cholesterol amount QTL GWAS1779597 (human)
RGD ID: 598060298
Trait: total cholesterol measurement, blood VLDL cholesterol amount
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position No map positions available.
Population Stats: Not Available




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1779597_HHumanblood total cholesterol level  IAGPrs6920309405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1779597_HHumanblood VLDL cholesterol amount  IAGPrs6920309405850206 GWAS_CATALOGPMID:35213538
GWAS1779597_HHumantotal cholesterol measurement  IAGPrs6920309405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs6920309)
Human AssemblyChrPosition (strand)Source
GRCh38616,134,016 - 16,134,017RGD_MAPPER_PIPELINE



1 to 20 of 24 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1779597_H GCST90092916 Cholesterol levels in medium VLDL 115,082 European ancestry individuals C 0.543151 1E-9 9 rs6920309 0.0252272 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1245095_H GCST90092908 Free cholesterol levels in medium LDL 115,082 European ancestry individuals C 0.543151 3E-8 7.523 rs6920309 0.0229574 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1246376_H GCST90092904 Cholesterol levels in medium LDL 115,082 European ancestry individuals C 0.543151 4E-8 7.398 rs6920309 0.0228584 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1248562_H GCST90092888 Phospholipid levels in LDL 115,082 European ancestry individuals C 0.543151 2E-8 7.699 rs6920309 0.0231483 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS1248791_H GCST90092863 Concentration of large LDL particles 115,082 European ancestry individuals C 0.543151 1E-8 8 rs6920309 0.0236991 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1249458_H GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals C 0.543151 3E-9 8.523 rs6920309 0.0247274 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092911 Concentration of medium LDL particles 115,082 European ancestry individuals C 0.543151 3E-9 8.523 rs6920309 0.0247332 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals C 0.543151 4E-8 7.398 rs6920309 0.0226039 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1253379_H GCST90092930 Total cholesterol minus HDL-C levels 115,082 European ancestry individuals C 0.543151 5E-8 7.302 rs6920309 0.0225575 total cholesterol measurement (EFO:0004574)
 PMID:35213538
GWAS1254642_H GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals C 0.543151 4E-9 8.398 rs6920309 0.0243583 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
None Available GCST90092814 Clinical LDL cholesterol levels 115,082 European ancestry individuals C 0.543151 2E-8 7.699 rs6920309 0.023224 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092964 Phospholipid levels in small LDL 115,082 European ancestry individuals C 0.543151 3E-9 8.523 rs6920309 0.0247196 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS1261298_H GCST90092956 Cholesterol levels in small LDL 115,082 European ancestry individuals C 0.543151 6E-9 8.222 rs6920309 0.0242697 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1261366_H GCST90092962 Total lipid levels in small LDL 115,082 European ancestry individuals C 0.543151 7E-9 8.155 rs6920309 0.0240462 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092963 Concentration of small LDL particles 115,082 European ancestry individuals C 0.543151 3E-9 8.523 rs6920309 0.0245819 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092958 Cholesteryl ester levels in small LDL 115,082 European ancestry individuals C 0.543151 3E-8 7.523 rs6920309 0.0230837 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092960 Free cholesterol levels in small LDL 115,082 European ancestry individuals C 0.543151 3E-9 8.523 rs6920309 0.0246942 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.543151 3E-8 7.523 rs6920309 0.0231112 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757937_H GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.543151 9E-9 8.046 rs6920309 0.0238797 free cholesterol measurement (EFO:0008591)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1392537_H GCST90018961 LDL cholesterol 343,621 European ancestry individuals, 72,866 East Asian ancestry individuals T NR 4E-20 19.398 rs6920309 0.0215 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34594039
1 to 20 of 24 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092916 GWAS Catalog

Note Type Note Reference