GWAS1705873_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1705873_H (alcohol use disorder measurement, alcohol consumption quality QTL GWAS1705873 (human)) Homo sapiens

Symbol: GWAS1705873_H
Name: alcohol use disorder measurement, alcohol consumption quality QTL GWAS1705873 (human)
RGD ID: 597986574
Trait: blood VLDL cholesterol amount   (VT:0005144)    
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position No map positions available.
Population Stats: Not Available




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1705873_HHumanblood VLDL cholesterol amount  IAGPrs28929474405850206Based on the EFO term IDGWAS_CATALOGPMID:36764567


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs28929474)
Human AssemblyChrPosition (strand)Source
GRCh381494,378,610 - 94,378,611RGD_MAPPER_PIPELINE



1 to 20 of 360 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1705873_H GCST010544 Problematic alcohol use (MTAG) 972,915 European ancestry individuals T 0.0184 2E-12 11.699 rs28929474 0.05428487 alcohol use disorder measurement (EFO:0009458)
alcohol consumption quality (OBA:1000840)
 PMID:32451486
GWAS1697944_H GCST003985 Breast size 33,790 European ancestry individuals ? NR 5E-7 6.302 rs28929474 0.215 breast size (OBA:1000025)
 PMID:27182965
GWAS1635187_H GCST90479640 hemoglobin (minimum, inv-norm transformed) 114,985 African American or Afro-Caribbean individuals, 55,838 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,894 European ancestry individuals C 0.9859 4E-14 13.398 rs28929474 0.08006 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1635487_H GCST90479629 hematocrit (mean, inv-norm transformed) 114,988 African American or Afro-Caribbean individuals, 55,841 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,852 European ancestry individuals C 0.9859 1E-20 20 rs28929474 0.1083 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1636011_H GCST90479639 hemoglobin (mean, inv-norm transformed) 114,985 African American or Afro-Caribbean individuals, 55,838 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,894 European ancestry individuals C 0.9859 2E-19 18.699 rs28929474 0.1002 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1636250_H GCST90479638 hemoglobin (maximum, inv-norm transformed) 114,984 African American or Afro-Caribbean individuals, 55,834 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,887 European ancestry individuals C 0.9859 6E-20 19.222 rs28929474 0.1054 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1636719_H GCST90479630 hematocrit (minimum, inv-norm transformed) 114,988 African American or Afro-Caribbean individuals, 55,841 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,854 European ancestry individuals C 0.9859 2E-15 14.699 rs28929474 0.08643 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1638098_H GCST90479530 Calcium (mean, inv-norm transformed) 74,137 African American or Afro-Caribbean individuals, 26,932 Hispanic or Latin American individuals, 3,651 East Asian ancestry individuals, 250,885 European ancestry individuals C 0.9859 1E-16 16 rs28929474 0.1079 calcium measurement (EFO:0004838)
 PMID:39024449
GWAS1120634_H GCST005162 Glucagon levels in response to oral glucose tolerance test (fasting) 3,344 Swedish ancestry individuals T 0.028 0.000001 6 rs28929474 0.067 glucagon measurement (EFO:0008463)
glucose tolerance test (EFO:0004307)
 PMID:29093273
GWAS1638415_H GCST90479529 Calcium (maximum, inv-norm transformed) 74,104 African American or Afro-Caribbean individuals, 26,929 Hispanic or Latin American individuals, 3,654 East Asian ancestry individuals, 250,919 European ancestry individuals C 0.9859 3E-15 14.523 rs28929474 0.1054 calcium measurement (EFO:0004838)
 PMID:39024449
GWAS1680333_H GCST90479592 Takes medication for Chronic lung diseases including COPD, Emphysema and Bronchitis? 3,204 African American or Afro-Caribbean cases, 52,301 African American or Afro-Caribbean controls, 26,432 European ancestry cases, 289,236 European ancestry controls, 1,213 Hispanic or Latin American cases, 28,101 Hispanic or Latin American controls C 0.9846 2E-11 10.699 rs28929474 0.2237 drug use measurement (EFO:0007010)
chronic lung disease (EFO:0009910)
 PMID:39024449
GWAS1704713_H GCST010703 Brain morphology (MOSTest) 26,502 European ancestry individuals ? NR 2E-9 8.699 rs28929474 N/A brain attribute (OBA:2045210)
neuroimaging measurement (EFO:0004346)
 PMID:32665545
GWAS568744_H GCST003976 Antineutrophil cytoplasmic antibody-associated vasculitis 1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls. T 0.02 3E-12 11.523 rs28929474 2.18 anti-neutrophil antibody associated vasculitis (EFO:0004826)
 PMID:28029757
GWAS1706076_H GCST010543 Alcohol consumption (drinks per week) (MTAG) 972,915 European ancestry individuals T 0.0154 2E-14 13.699 rs28929474 0.053747147 alcohol consumption quality (OBA:1000840)
 PMID:32451486
GWAS1708712_H GCST008163 Height 1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals T 0.0189 1E-7 7 rs28929474 0.1346 body height (OBA:VT0001253)
 PMID:28552196
GWAS1647300_H GCST90476027 Chronic airway obstruction (PheCode 496) 103,054 European ancestry cases, 315,450 European ancestry controls C 0.9816 4E-11 10.398 rs28929474 0.1056 chronic obstructive pulmonary disease (EFO:0000341)
 PMID:39024449
GWAS1648051_H GCST90475936 Coronary atherosclerosis (PheCode 411.4) 124,302 European ancestry cases, 300,039 European ancestry controls C 0.9816 5E-15 14.302 rs28929474 0.1361 PMID:39024449
None Available GCST90475929 Ischemic heart disease (PheCode 411) 141,465 European ancestry cases, 275,809 European ancestry controls C 0.9816 2E-15 14.699 rs28929474 0.1322 coronary artery disease (EFO:0001645)
 PMID:39024449
GWAS1144544_H GCST009777 C-reactive protein levels 418,642 British ancestry individuals C 0.979816 3E-49 48.523 rs28929474 0.103242 C-reactive protein measurement (EFO:0004458)
 PMID:31900758
GWAS1650281_H GCST90476316 prostate-specific antigen (PSA, maximum, inv-norm transformed) 254,456 European ancestry individuals C 0.9816 6E-36 35.222 rs28929474 0.1464 prostate specific antigen amount (OBA:2050200)
 PMID:39024449
1 to 20 of 360 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST010544 GWAS Catalog
  GCST90091060 GWAS Catalog
  GCST90269684 GWAS Catalog

Note Type Note Reference