GWAS1675308_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1675308_H (triglyceride measurement QTL GWAS1675308 (human)) Homo sapiens

Symbol: GWAS1675308_H
Name: triglyceride measurement QTL GWAS1675308 (human)
RGD ID: 597618448
Trait: triglyceride measurement
Measurement Type: blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,964,203 - 46,964,204RGD_MAPPER_PIPELINEGRCh38
GRCh372045,592,842 - 45,592,843RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1675308_HHumanblood triglyceride level  IAGPrs1211644405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1675308_HHumantriglyceride measurement  IAGPrs1211644405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs1211644)
Human AssemblyChrPosition (strand)Source
GRCh382046,964,203 - 46,964,204RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597209114GWAS1305188_Htriglyceride measurement, body fat percentage QTL GWAS1305188 (human)2e-12body fat mass (VT:0010482)body fat percentage (CMO:0000302)204696420346964204Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597620471GWAS1677331_Htriglyceride measurement QTL GWAS1677331 (human)1e-15triglyceride measurementblood triglyceride level (CMO:0000118)204696420346964204Human
597588579GWAS1645439_Hglucose measurement QTL GWAS1645439 (human)4e-14glucose measurementblood glucose level (CMO:0000046)204696420346964204Human
597618448GWAS1675308_Htriglyceride measurement QTL GWAS1675308 (human)2e-11triglyceride measurementblood triglyceride level (CMO:0000118)204696420346964204Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1675308_H GCST90480719 triglyceride (minimum, inv-norm transformed) 107,786 African American or Afro-Caribbean individuals, 53,539 Hispanic or Latin American individuals, 5,817 East Asian ancestry individuals, 391,797 European ancestry individuals T 0.6926 2E-11 10.699 rs1211644 0.02172 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1645439_H GCST90479626 Glucose (fasting status unknown, mean, inv-norm transformed) 118,233 African American or Afro-Caribbean individuals, 57,284 Hispanic or Latin American individuals, 6,317 East Asian ancestry individuals, 419,946 European ancestry individuals T 0.6915 4E-14 13.398 rs1211644 0.02446 glucose measurement (EFO:0004468)
 PMID:39024449
GWAS1677331_H GCST90480717 triglyceride (maximum, inv-norm transformed) 107,605 African American or Afro-Caribbean individuals, 53,373 Hispanic or Latin American individuals, 5,787 East Asian ancestry individuals, 391,247 European ancestry individuals T 0.6926 1E-15 15 rs1211644 0.02648 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1305188_H GCST011342 Body fat percentage and triglycerides (pairwise) 268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals C 0.2416 2E-12 11.699 rs1211644 N/A triglyceride measurement (EFO:0004530)
body fat percentage (EFO:0007800)
 PMID:33619380
Database
Acc Id
Source(s)
GWAS Catalog GCST90480719 GWAS Catalog

Note Type Note Reference