GWAS1675281_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1675281_H (atrial fibrillation QTL GWAS1675281 (human)) Homo sapiens

Symbol: GWAS1675281_H
Name: atrial fibrillation QTL GWAS1675281 (human)
RGD ID: 597618421
Trait: atrial fibrillation
LOD Score: Not Available
P Value: 4.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,107,367 - 10,107,368RGD_MAPPER_PIPELINEGRCh38
GRCh37110,167,425 - 10,167,426RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1675281_HHumanatrial fibrillation  IAGPrs187585530405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1675281_HHumanAtrial fibrillation  IAGPrs187585530405850206 GWAS_CATALOGPMID:39024449
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1675281_HHumanatrial fibrillation  IAGPrs187585530405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1312355UBE4Bubiquitination factor E4B11003295810181239Human


Peak: (rs187585530)
Human AssemblyChrPosition (strand)Source
GRCh38110,107,367 - 10,107,368RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597590047GWAS1646907_Hatrial fibrillation QTL GWAS1646907 (human)4e-23atrial fibrillation11010736710107368Human
597028096GWAS1124170_Hatrial fibrillation QTL GWAS1124170 (human)1e-10atrial fibrillation11010736710107368Human
597618421GWAS1675281_Hatrial fibrillation QTL GWAS1675281 (human)4e-16atrial fibrillation11010736710107368Human
597591141GWAS1648001_Hatrial fibrillation QTL GWAS1648001 (human)3e-22atrial fibrillation11010736710107368Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597618403GWAS1675263_Hatrial fibrillation QTL GWAS1675263 (human)5e-16atrial fibrillation11010736710107368Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1675281_H GCST90480170 Atrial fibrillation and flutter (PheCode 427.2) 9,482 African American or Afro-Caribbean cases, 109,200 African American or Afro-Caribbean controls, 4,250 Hispanic or Latin American cases, 54,584 Hispanic or Latin American controls, 416 East Asian ancestry cases, 6,327 East Asian ancestry controls, 74,152 European ancestry cases, 363,596 European ancestry controls G 0.9982 4E-16 15.398 rs187585530 0.6155 atrial fibrillation (EFO:0000275)
 PMID:39024449
GWAS1124170_H GCST006061 Atrial fibrillation 55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls A 0.0053 1E-10 10 rs187585530 1.55 atrial fibrillation (EFO:0000275)
 PMID:29892015
None Available GCST006061 Atrial fibrillation 55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls A 0.0053 1E-10 10 rs187585530 1.55 atrial fibrillation (EFO:0000275)
 PMID:29892015
GWAS1646907_H GCST90475967 Atrial fibrillation and flutter (PheCode 427.2) 74,152 European ancestry cases, 363,596 European ancestry controls G 0.9977 4E-23 22.398 rs187585530 0.594 atrial fibrillation (EFO:0000275)
 PMID:39024449
GWAS1648001_H GCST90475970 Atrial fibrillation (PheCode 427.21) 71,577 European ancestry cases, 366,195 European ancestry controls G 0.9977 3E-22 21.523 rs187585530 0.5939 atrial fibrillation (EFO:0000275)
 PMID:39024449
GWAS1675263_H GCST90480168 Atrial fibrillation (PheCode 427.21) 8,873 African American or Afro-Caribbean cases, 109,974 African American or Afro-Caribbean controls, 4,063 Hispanic or Latin American cases, 54,799 Hispanic or Latin American controls, 397 East Asian ancestry cases, 6,355 East Asian ancestry controls, 71,577 European ancestry cases, 366,195 European ancestry controls G 0.9982 5E-16 15.302 rs187585530 0.6168 atrial fibrillation (EFO:0000275)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90480170 GWAS Catalog

Note Type Note Reference