GWAS1673226_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1673226_H (platelet count QTL GWAS1673226 (human)) Homo sapiens

Symbol: GWAS1673226_H
Name: platelet count QTL GWAS1673226 (human)
RGD ID: 597616366
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 6.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,274,109 - 2,274,110RGD_MAPPER_PIPELINEGRCh38
GRCh3712,205,548 - 2,205,549RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673226_HHumanplatelet count  IAGPrs12047069405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673226_HHumanplatelet quantity  IAGPrs12047069405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673226_HHumanplatelet count  IAGPrs12047069405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342955SKISKI proto-oncogene122283192310213Human
155639603LOC127266901H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2204820-2205782122733812274343Human


Peak: (rs12047069)
Human AssemblyChrPosition (strand)Source
GRCh3812,274,109 - 2,274,110RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597616366GWAS1673226_Hplatelet count QTL GWAS1673226 (human)6e-21platelet quantity (VT:0003179)platelet count (CMO:0000029)122741092274110Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1673226_H GCST90480652 platelet count (minimum, inv-norm transformed) 114,799 African American or Afro-Caribbean individuals, 55,776 Hispanic or Latin American individuals, 5,949 East Asian ancestry individuals, 407,168 European ancestry individuals A 0.3926 6E-21 20.222 rs12047069 0.03103 platelet count (EFO:0004309)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90480652 GWAS Catalog

Note Type Note Reference