GWAS1673071_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1673071_H (platelet count QTL GWAS1673071 (human)) Homo sapiens

Symbol: GWAS1673071_H
Name: platelet count QTL GWAS1673071 (human)
RGD ID: 597616211
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 2E-84
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38174,937,573 - 4,937,574RGD_MAPPER_PIPELINEGRCh38
GRCh37174,840,868 - 4,840,869RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673071_HHumanplatelet count  IAGPrs1060431405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673071_HHumanplatelet quantity  IAGPrs1060431405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1673071_HHumanplatelet count  IAGPrs1060431405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732504SLC25A11solute carrier family 25 member 111749371304940046Human


Peak: (rs1060431)
Human AssemblyChrPosition (strand)Source
GRCh38174,937,573 - 4,937,574RGD_MAPPER_PIPELINE


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597593694GWAS1650554_Hplatelet count QTL GWAS1650554 (human)5e-22platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597590973GWAS1647833_Hplatelet count QTL GWAS1647833 (human)2e-20platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597593725GWAS1650585_Hplatelet count QTL GWAS1650585 (human)4e-103platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597615062GWAS1671922_Hplatelet count QTL GWAS1671922 (human)6e-67platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597307795GWAS1403869_Hplatelet count QTL GWAS1403869 (human)2e-135platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597162364GWAS1258438_Hplatelet count QTL GWAS1258438 (human)3e-85platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
597182419GWAS1278493_Hplatelet glycoprotein ib alpha chain measurement QTL GWAS1278493 (human)3e-38platelet glycoprotein ib alpha chain measurement1749375734937574Human
406963724GWAS612700_Hplatelet crit QTL GWAS612700 (human)1e-12platelet quantity (VT:0003179)plateletcrit (CMO:0001349)1749375734937574Human
597616211GWAS1673071_Hplatelet count QTL GWAS1673071 (human)2e-84platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human
406954606GWAS603582_Hplatelet count QTL GWAS603582 (human)1e-19platelet quantity (VT:0003179)platelet count (CMO:0000029)1749375734937574Human

1 to 10 of 22 rows


1 to 20 of 27 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1673071_H GCST90480651 platelet count (mean, inv-norm transformed) 114,731 African American or Afro-Caribbean individuals, 55,759 Hispanic or Latin American individuals, 5,948 East Asian ancestry individuals, 407,021 European ancestry individuals G 0.8888 2E-84 83.699 rs1060431 0.08678 platelet count (EFO:0004309)
 PMID:39024449
GWAS1647833_H GCST90476294 platelet count (maximum, inv-norm transformed) 55,712 Hispanic or Latin American individuals G 0.8736 2E-20 19.699 rs1060431 0.08628 platelet count (EFO:0004309)
 PMID:39024449
GWAS603582_H GCST004603 Platelet count 166,066 European ancestry individuals A 0.0735 1E-19 19 rs1060431 0.0636259 platelet count (EFO:0004309)
 PMID:27863252
GWAS1649788_H GCST90476298 platelet count (mean, inv-norm transformed) 235 African American or Afro-Caribbean individuals G 0.7783 1E-32 32 rs1060431 0.06391 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650059_H GCST90476300 platelet count (minimum, inv-norm transformed) 55,776 Hispanic or Latin American individuals G 0.8736 2E-16 15.699 rs1060431 0.07552 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650116_H GCST90476299 platelet count (mean, inv-norm transformed) 407,021 European ancestry individuals G 0.9212 3E-129 128.523 rs1060431 0.1275 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650221_H GCST90476296 platelet count (maximum, inv-norm transformed) 406,601 European ancestry individuals G 0.9212 5E-86 85.302 rs1060431 0.104 platelet count (EFO:0004309)
 PMID:39024449
GWAS612700_H GCST004607 Plateletcrit 164,339 European ancestry individuals A 0.0736 1E-12 12 rs1060431 0.04995122 platelet crit (EFO:0007985)
 PMID:27863252
GWAS1650469_H GCST90476295 platelet count (maximum, inv-norm transformed) 114,580 African American or Afro-Caribbean individuals G 0.7783 6E-24 23.222 rs1060431 0.05444 platelet count (EFO:0004309)
 PMID:39024449
GWAS615431_H GCST004616 Platelet distribution width 164,433 European ancestry individuals A 0.0736 2E-26 25.699 rs1060431 0.07337288 platelet component distribution width (EFO:0007984)
 PMID:27863252
GWAS1650554_H GCST90476297 platelet count (mean, inv-norm transformed) 55,759 Hispanic or Latin American individuals G 0.8736 5E-22 21.302 rs1060431 0.08935 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650585_H GCST90476302 platelet count (minimum, inv-norm transformed) 407,168 European ancestry individuals G 0.9212 4E-103 102.398 rs1060431 0.1092 platelet count (EFO:0004309)
 PMID:39024449
GWAS1182867_H GCST90002361 Platelet count 721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.0874692 3E-170 169.523 rs1060431 N/A platelet count (EFO:0004309)
 PMID:32888493
GWAS1183091_H GCST90002358 Platelet count 145,648 East Asian ancestry individuals G 0.884852 5E-73 72.302 rs1060431 0.105657 platelet count (EFO:0004309)
 PMID:32888493
GWAS1209835_H GCST90002401 Platelet distribution width 408,112 British individuals A 0.074053 8E-81 80.097 rs1060431 0.08184654 platelet component distribution width (EFO:0007984)
 PMID:32888494
GWAS1670593_H GCST90480652 platelet count (minimum, inv-norm transformed) 114,799 African American or Afro-Caribbean individuals, 55,776 Hispanic or Latin American individuals, 5,949 East Asian ancestry individuals, 407,168 European ancestry individuals G 0.8888 1E-74 74 rs1060431 0.07825 platelet count (EFO:0004309)
 PMID:39024449
GWAS1216241_H GCST90026509 Platelet count 16,201 African American or Afro-Caribbean individuals A 0.7689 0.000009 5.046 rs1060431 0.0595 platelet count (EFO:0004309)
 PMID:34107879
GWAS1671922_H GCST90480650 platelet count (maximum, inv-norm transformed) 114,580 African American or Afro-Caribbean individuals, 55,712 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 406,601 European ancestry individuals G 0.8888 6E-67 66.222 rs1060431 0.07513 platelet count (EFO:0004309)
 PMID:39024449
GWAS1258438_H GCST90018749 Platelet count 148,623 East Asian ancestry individuals A 0.118915 3E-85 84.523 rs1060431 0.100228 platelet count (EFO:0004309)
 PMID:34594039
GWAS1278493_H GCST90248979 Platelet glycoprotein Ib alpha chain levels 10,708 European ancestry individuals A 0.07 3E-38 37.523 rs1060431 0.32 platelet glycoprotein ib alpha chain measurement (EFO:0020645)
 PMID:34648354
1 to 20 of 27 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90480651 GWAS Catalog

Note Type Note Reference