GWAS1666829_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1666829_H (monocyte count QTL GWAS1666829 (human)) Homo sapiens

Symbol: GWAS1666829_H
Name: monocyte count QTL GWAS1666829 (human)
RGD ID: 597609969
Trait: monocyte quantity   (VT:0000223)    
Measurement Type: blood monocyte count   (CMO:0000032)    
LOD Score: Not Available
P Value: 7.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38121,998,568 - 21,998,569RGD_MAPPER_PIPELINEGRCh38
GRCh37122,325,061 - 22,325,062RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1666829_HHumanblood monocyte count  IAGPrs4655011405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1666829_HHumanmonocyte quantity  IAGPrs4655011405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1666829_HHumanmonocyte count  IAGPrs4655011405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317234CELA3Bchymotrypsin like elastase 3B12197702221998642Human


Peak: (rs4655011)
Human AssemblyChrPosition (strand)Source
GRCh38121,998,568 - 21,998,569RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597609969GWAS1666829_Hmonocyte count QTL GWAS1666829 (human)7e-18monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)12199856821998569Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1666829_H GCST90479706 monocyte (fraction, minimum, inv-norm transformed) 82,924 African American or Afro-Caribbean individuals, 45,327 Hispanic or Latin American individuals, 4,359 East Asian ancestry individuals, 296,975 European ancestry individuals G 0.4731 7E-18 17.155 rs4655011 0.0289 monocyte count (EFO:0005091)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90479706 GWAS Catalog

Note Type Note Reference