GWAS1666626_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1666626_H (basophil measurement QTL GWAS1666626 (human)) Homo sapiens

Symbol: GWAS1666626_H
Name: basophil measurement QTL GWAS1666626 (human)
RGD ID: 597609766
Trait: basophil measurement
LOD Score: Not Available
P Value: 2.0E-46
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382137,379,761 - 37,379,762RGD_MAPPER_PIPELINEGRCh38
GRCh372138,752,063 - 38,752,064RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1666626_HHumanbasophil measurement  IAGPrs73216408405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
737237DYRK1Adual specificity tyrosine phosphorylation regulated kinase 1A213736557337526358Human


Peak: (rs73216408)
Human AssemblyChrPosition (strand)Source
GRCh382137,379,761 - 37,379,762RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597600264GWAS1657124_Hbasophil measurement QTL GWAS1657124 (human)1e-33basophil measurement213737976137379762Human
597609766GWAS1666626_Hbasophil measurement QTL GWAS1666626 (human)2e-46basophil measurement213737976137379762Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1666626_H GCST90475139 Basophil (fraction, mean, inv-norm transformed) 221,657 European ancestry individuals T 0.8917 2E-46 45.699 rs73216408 0.08036 basophil measurement (EFO:0803539)
 PMID:39024449
GWAS1657124_H GCST90479516 Basophil (fraction, mean, inv-norm transformed) 67,485 African American or Afro-Caribbean individuals, 36,872 Hispanic or Latin American individuals, 4,010 East Asian ancestry individuals, 221,657 European ancestry individuals T 0.9158 1E-33 33 rs73216408 0.07649 basophil measurement (EFO:0803539)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90475139 GWAS Catalog

Note Type Note Reference