GWAS1659901_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1659901_H (prostate cancer QTL GWAS1659901 (human)) Homo sapiens

Symbol: GWAS1659901_H
Name: prostate cancer QTL GWAS1659901 (human)
RGD ID: 597603041
Trait: prostate cancer
LOD Score: Not Available
P Value: 9.0E-36
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381252,915,800 - 52,915,801RGD_MAPPER_PIPELINEGRCh38
GRCh371253,309,584 - 53,309,585RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1659901_HHumanprostate cancer  IAGPrs4919743405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:39024449


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735536KRT8keratin 8125289719152949860Human


Peak: (rs4919743)
Human AssemblyChrPosition (strand)Source
GRCh381252,915,800 - 52,915,801RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597607420GWAS1664280_Hprostate carcinoma QTL GWAS1664280 (human)3e-67prostate carcinoma125291580052915801Human
597602178GWAS1659038_Hdrug use measurement, prostate cancer QTL GWAS1659038 (human)1e-15drug use measurement, prostate cancer125291580052915801Human
597603041GWAS1659901_Hprostate cancer QTL GWAS1659901 (human)9e-36prostate cancer125291580052915801Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1659901_H GCST90479536 Prostate cancer 5,764 African American or Afro-Caribbean cases, 42,247 African American or Afro-Caribbean controls, 28,645 European ancestry cases, 264,556 European ancestry controls, 1,678 Hispanic or Latin American cases, 24,750 Hispanic or Latin American controls G 0.8815 9E-36 35.046 rs4919743 0.1672 PMID:39024449
GWAS1659038_H GCST90479535 Takes medication for prostate cancer? 2,414 African American or Afro-Caribbean cases, 45,597 African American or Afro-Caribbean controls, 7,566 European ancestry cases, 285,635 European ancestry controls, 592 Hispanic or Latin American cases, 25,836 Hispanic or Latin American controls G 0.8815 1E-15 15 rs4919743 0.1749 drug use measurement (EFO:0007010)
 PMID:39024449
GWAS1664280_H GCST90479803 Cancer of prostate (PheCode 185) 15,097 African American or Afro-Caribbean cases, 88,327 African American or Afro-Caribbean controls, 3,485 Hispanic or Latin American cases, 49,682 Hispanic or Latin American controls, 306 East Asian ancestry cases, 5,753 East Asian ancestry controls, 42,997 European ancestry cases, 368,045 European ancestry controls G 0.8819 3E-67 66.523 rs4919743 0.1829 prostate carcinoma (EFO:0001663)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90479536 GWAS Catalog

Note Type Note Reference