GWAS1652284_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1652284_H (blood urea nitrogen measurement QTL GWAS1652284 (human)) Homo sapiens

Symbol: GWAS1652284_H
Name: blood urea nitrogen measurement QTL GWAS1652284 (human)
RGD ID: 597595424
Trait: blood urea nitrogen measurement
Measurement Type: blood urea nitrogen level   (CMO:0000049)    
LOD Score: Not Available
P Value: 1.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,675,806 - 10,675,807RGD_MAPPER_PIPELINEGRCh38
GRCh37110,735,863 - 10,735,864RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1652284_HHumanblood urea nitrogen level  IAGPrs114991492405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1652284_HHumanblood urea nitrogen measurement  IAGPrs114991492405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606535CASZ1castor zinc finger 111063660410796646Human
155637893LOC127267421H3K4me1 hESC enhancer GRCh37_chr1:10735694-1073648411067563710676427Human


Peak: (rs114991492)
Human AssemblyChrPosition (strand)Source
GRCh38110,675,806 - 10,675,807RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597600863GWAS1657723_Hblood urea nitrogen measurement QTL GWAS1657723 (human)3e-11blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)11067580610675807Human
597594060GWAS1650920_Hblood urea nitrogen measurement QTL GWAS1650920 (human)1e-14blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)11067580610675807Human
597600697GWAS1657557_Hblood urea nitrogen measurement QTL GWAS1657557 (human)5e-12blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)11067580610675807Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597595424GWAS1652284_Hblood urea nitrogen measurement QTL GWAS1652284 (human)1e-16blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)11067580610675807Human

1 to 9 of 9 rows


1 to 10 of 10 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1652284_H GCST90475165 Blood urea nitrogen (BUN, mean, inv-norm transformed) 418,647 European ancestry individuals C 0.8459 1E-16 16 rs114991492 0.03171 blood urea nitrogen measurement (EFO:0004741)
 PMID:39024449
GWAS1650920_H GCST90475162 Blood urea nitrogen (BUN, maximum, inv-norm transformed) 418,135 European ancestry individuals C 0.8459 1E-14 14 rs114991492 0.02875 blood urea nitrogen measurement (EFO:0004741)
 PMID:39024449
GWAS1657557_H GCST90479525 Blood urea nitrogen (BUN, mean, inv-norm transformed) 117,876 African American or Afro-Caribbean individuals, 57,109 Hispanic or Latin American individuals, 6,288 East Asian ancestry individuals, 418,647 European ancestry individuals C 0.8492 5E-12 11.302 rs114991492 0.02757 blood urea nitrogen measurement (EFO:0004741)
 PMID:39024449
GWAS1657723_H GCST90479524 Blood urea nitrogen (BUN, maximum, inv-norm transformed) 117,530 African American or Afro-Caribbean individuals, 57,007 Hispanic or Latin American individuals, 6,277 East Asian ancestry individuals, 418,135 European ancestry individuals C 0.8492 3E-11 10.523 rs114991492 0.02517 blood urea nitrogen measurement (EFO:0004741)
 PMID:39024449
GWAS1761507_H GCST90475226 creatinine (maximum, inv-norm transformed) 420,576 European ancestry individuals C 0.8459 7E-15 14.155 rs114991492 0.03143 serum creatinine amount (OBA:2050096)
 PMID:39024449
GWAS1761942_H GCST90475282 estimated glomerular filtration rate (eGFR, mean, inv-norm transformed) 398,886 European ancestry individuals C 0.8458 6E-17 16.222 rs114991492 0.03354 glomerular filtration rate (OBA:0003747)
 PMID:39024449
GWAS1762128_H GCST90475232 creatinine (minimum, inv-norm transformed) 421,910 European ancestry individuals C 0.846 5E-14 13.302 rs114991492 0.03107 serum creatinine amount (OBA:2050096)
 PMID:39024449
GWAS1762245_H GCST90475285 estimated glomerular filtration rate (eGFR, minimum, inv-norm transformed) 398,886 European ancestry individuals C 0.8458 8E-15 14.097 rs114991492 0.03043 glomerular filtration rate (OBA:0003747)
 PMID:39024449
GWAS1762259_H GCST90475280 estimated glomerular filtration rate (eGFR, maximum, inv-norm transformed) 398,886 European ancestry individuals C 0.8458 5E-13 12.302 rs114991492 0.02946 glomerular filtration rate (OBA:0003747)
 PMID:39024449
GWAS1762333_H GCST90475229 creatinine (mean, inv-norm transformed) 421,411 European ancestry individuals C 0.846 9E-17 16.046 rs114991492 0.03385 serum creatinine amount (OBA:2050096)
 PMID:39024449
1 to 10 of 10 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90475165 GWAS Catalog

Note Type Note Reference