GWAS1648396_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1648396_H (movement disorder QTL GWAS1648396 (human)) Homo sapiens

Symbol: GWAS1648396_H
Name: movement disorder QTL GWAS1648396 (human)
RGD ID: 597591536
Trait: movement disorder
LOD Score: Not Available
P Value: 9.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381535,889,353 - 35,889,354RGD_MAPPER_PIPELINEGRCh38
GRCh371536,181,554 - 36,181,555RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1648396_HHumanmovement disease  IAGPrs77614227405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1648396_HHumanAbnormality of movement  IAGPrs77614227405850206 GWAS_CATALOGPMID:39024449
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1648396_HHumanmovement disorder  IAGPrs77614227405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs77614227)
Human AssemblyChrPosition (strand)Source
GRCh381535,889,353 - 35,889,354RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597325391GWAS1421465_Hinsomnia QTL GWAS1421465 (human)5e-09insomnia153588935335889354Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597591536GWAS1648396_Hmovement disorder QTL GWAS1648396 (human)9e-15movement disorder153588935335889354Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1648396_H GCST90480004 Sleep related movement disorders (PheCode 327.7) 2,613 African American or Afro-Caribbean cases, 115,714 African American or Afro-Caribbean controls, 21,024 European ancestry cases, 414,231 European ancestry controls, 2,129 Hispanic or Latin American cases, 55,494 Hispanic or Latin American controls T 0.9543 9E-15 14.046 rs77614227 0.1602 movement disorder (EFO:0004280)
 PMID:39024449
GWAS1421465_H GCST90131901 Insomnia 593,724 European ancestry cases, 1,771,286 European ancestry controls T NR 5E-9 8.302 rs77614227 0.012 insomnia (EFO:0004698)
 PMID:35835914
Database
Acc Id
Source(s)
GWAS Catalog GCST90480004 GWAS Catalog

Note Type Note Reference