GWAS1645220_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1645220_H (eosinophil count QTL GWAS1645220 (human)) Homo sapiens

Symbol: GWAS1645220_H
Name: eosinophil count QTL GWAS1645220 (human)
RGD ID: 597588360
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381742,285,248 - 42,285,249RGD_MAPPER_PIPELINEGRCh38
GRCh371740,437,266 - 40,437,267RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1645220_HHumanblood eosinophil count  IAGPrs113335173405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1645220_HHumaneosinophil quantity  IAGPrs113335173405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1645220_HHumaneosinophil count  IAGPrs113335173405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
730906STAT5Bsignal transducer and activator of transcription 5B174219917742288370Human


Peak: (rs113335173)
Human AssemblyChrPosition (strand)Source
GRCh381742,285,248 - 42,285,249RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597594970GWAS1651830_Heosinophil count QTL GWAS1651830 (human)1e-12eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)174228524842285249Human
597588360GWAS1645220_Heosinophil count QTL GWAS1645220 (human)3e-12eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)174228524842285249Human
597585287GWAS1642147_Heosinophil count QTL GWAS1642147 (human)3e-11eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)174228524842285249Human
597595056GWAS1651916_Heosinophil count QTL GWAS1651916 (human)5e-15eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)174228524842285249Human
597596753GWAS1653613_Heosinophil count QTL GWAS1653613 (human)4e-13eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)174228524842285249Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1645220_H GCST90479605 eosinophil (fraction, mean, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.9644 3E-12 11.523 rs113335173 0.05342 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1642147_H GCST90479602 eosinophil (absolute count, mean, inv-norm transformed) 90,448 African American or Afro-Caribbean individuals, 42,397 Hispanic or Latin American individuals, 3,996 East Asian ancestry individuals, 310,757 European ancestry individuals C 0.9643 3E-11 10.523 rs113335173 0.04992 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1651830_H GCST90475296 eosinophil (fraction, maximum, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals C 0.8356 1E-12 12 rs113335173 0.04972 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1651916_H GCST90475299 eosinophil (fraction, mean, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals C 0.8356 5E-15 14.302 rs113335173 0.0552 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1653613_H GCST90475290 eosinophil (absolute count, mean, inv-norm transformed) 90,448 African American or Afro-Caribbean individuals C 0.8356 4E-13 12.398 rs113335173 0.05106 eosinophil count (EFO:0004842)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90479605 GWAS Catalog

Note Type Note Reference