GWAS1638113_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1638113_H (skin cancer QTL GWAS1638113 (human)) Homo sapiens

Symbol: GWAS1638113_H
Name: skin cancer QTL GWAS1638113 (human)
RGD ID: 597581253
Trait: skin cancer
LOD Score: Not Available
P Value: 3.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,423,008 - 17,423,009RGD_MAPPER_PIPELINEGRCh38
GRCh37117,749,504 - 17,749,505RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1638113_HHumanskin cancer  IAGPrs730153405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:39024449


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603393RCC2regulator of chromosome condensation 211740676017439677Human


Peak: (rs730153)
Human AssemblyChrPosition (strand)Source
GRCh38117,423,008 - 17,423,009RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597030532GWAS1126606_Hkeratinocyte carcinoma QTL GWAS1126606 (human)2e-57keratinocyte carcinoma11742300817423009Human
597586012GWAS1642872_Hskin neoplasm QTL GWAS1642872 (human)3e-11skin neoplasm11742300817423009Human
597233053GWAS1329127_Hbasal cell carcinoma QTL GWAS1329127 (human)9e-61basal cell carcinoma11742300817423009Human
597581253GWAS1638113_Hskin cancer QTL GWAS1638113 (human)3e-14skin cancer11742300817423009Human
597595445GWAS1652305_Hskin cancer QTL GWAS1652305 (human)9e-19skin cancer11742300817423009Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1638113_H GCST90479538 Skin cancer 431 African American or Afro-Caribbean cases, 55,074 African American or Afro-Caribbean controls, 55,282 European ancestry cases, 260,386 European ancestry controls, 979 Hispanic or Latin American cases, 28,335 Hispanic or Latin American controls G 0.6529 3E-14 13.523 rs730153 0.06088 PMID:39024449
GWAS1642872_H GCST90475585 Neoplasm of uncertain behavior of skin (PheCode 173) 59,327 European ancestry cases, 338,779 European ancestry controls G 0.6563 3E-11 10.523 rs730153 0.04354 skin neoplasm (EFO:0004198)
 PMID:39024449
GWAS1126606_H GCST008870 Keratinocyte cancer (MTAG) at least 18,538 European ancestry cases, at least 340,302 European ancestry controls A 0.364153 2E-57 56.699 rs730153 1.1494253 keratinocyte carcinoma (EFO:0010176)
 PMID:31174203
GWAS1652305_H GCST90475189 Skin cancer 55,282 European ancestry cases, 260,386 European ancestry controls G 0.6562 9E-19 18.046 rs730153 0.06105 PMID:39024449
GWAS1329127_H GCST90013410 Basal cell carcinoma 17,416 European ancestry cases, 375,455 European ancestry controls A 0.362745 9E-61 60.046 rs730153 0.18210195 basal cell carcinoma (EFO:0004193)
 PMID:33549134
GWAS1416769_H GCST90137411 Basal cell carcinoma (MTAG) 20,791 European ancestry cases, 286,893 European ancestry controls A NR 2E-195 194.699 rs730153 N/A basal cell carcinoma (EFO:0004193)
 PMID:36496446
Database
Acc Id
Source(s)
GWAS Catalog GCST90479538 GWAS Catalog

Note Type Note Reference