GWAS1636283_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1636283_H (hemoglobin measurement QTL GWAS1636283 (human)) Homo sapiens

Symbol: GWAS1636283_H
Name: hemoglobin measurement QTL GWAS1636283 (human)
RGD ID: 597579423
Trait: hemoglobin measurement
Measurement Type: hemoglobin measurement   (CMO:0000508)    
LOD Score: Not Available
P Value: 9.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,658,501 - 43,658,502RGD_MAPPER_PIPELINEGRCh38
GRCh371543,950,699 - 43,950,700RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1636283_HHumanhemoglobin measurement  IAGPrs141866277405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1636283_HHumanhemoglobin measurement  IAGPrs141866277405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38604684PPIP5K1P1-CATSPER2PPIP5K1P1-CATSPER2 readthrough154363056243690031Human


Peak: (rs141866277)
Human AssemblyChrPosition (strand)Source
GRCh381543,658,501 - 43,658,502RGD_MAPPER_PIPELINE


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597598815GWAS1655675_Hhemoglobin measurement QTL GWAS1655675 (human)3e-23hemoglobin measurementhemoglobin measurement (CMO:0000508)154365850143658502Human
597579423GWAS1636283_Hhemoglobin measurement QTL GWAS1636283 (human)9e-20hemoglobin measurementhemoglobin measurement (CMO:0000508)154365850143658502Human
597499999GWAS1596073_Hprotein measurement QTL GWAS1596073 (human)9e-12protein measurement154365850143658502Human
597598237GWAS1655097_Hmean corpuscular hemoglobin concentration QTL GWAS1655097 (human)2e-22mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)154365850143658502Human
597592283GWAS1649143_Hhigh density lipoprotein cholesterol measurement QTL GWAS1649143 (human)1e-72high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154365850143658502Human
597594072GWAS1650932_Hhematocrit QTL GWAS1650932 (human)9e-15hematocrithematocrit (CMO:0000037)154365850143658502Human
597597784GWAS1654644_Hhemoglobin measurement QTL GWAS1654644 (human)3e-12hemoglobin measurementhemoglobin measurement (CMO:0000508)154365850143658502Human
597592406GWAS1649266_Hhigh density lipoprotein cholesterol measurement QTL GWAS1649266 (human)1e-75high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154365850143658502Human
597579152GWAS1636012_Hhemoglobin measurement QTL GWAS1636012 (human)4e-16hemoglobin measurementhemoglobin measurement (CMO:0000508)154365850143658502Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human

1 to 10 of 33 rows


1 to 20 of 26 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1636283_H GCST90479638 hemoglobin (maximum, inv-norm transformed) 114,984 African American or Afro-Caribbean individuals, 55,834 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,887 European ancestry individuals A 0.9789 9E-20 19.046 rs141866277 0.08988 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1636012_H GCST90479639 hemoglobin (mean, inv-norm transformed) 114,985 African American or Afro-Caribbean individuals, 55,838 Hispanic or Latin American individuals, 5,963 East Asian ancestry individuals, 407,894 European ancestry individuals A 0.9789 4E-16 15.398 rs141866277 0.07791 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1639893_H GCST90479670 mean corpuscular hemoglobin concentration (MCHC, mean, inv-norm transformed) 114,851 African American or Afro-Caribbean individuals, 55,797 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,345 European ancestry individuals A 0.9789 2E-16 15.699 rs141866277 0.08786 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1649143_H GCST90475348 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 404,121 European ancestry individuals A 0.9744 1E-72 72 rs141866277 0.1755 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1649266_H GCST90475356 high density lipoprotein cholesterol (HDLC, minimm, inv-norm transformed) 404,121 European ancestry individuals A 0.9744 1E-75 75 rs141866277 0.179 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1649684_H GCST90476296 platelet count (maximum, inv-norm transformed) 406,601 European ancestry individuals A 0.9745 4E-44 43.398 rs141866277 0.1336 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650429_H GCST90476299 platelet count (mean, inv-norm transformed) 407,021 European ancestry individuals A 0.9745 5E-69 68.302 rs141866277 0.1679 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650932_H GCST90475341 hematocrit (mean, inv-norm transformed) 407,852 European ancestry individuals A 0.9745 9E-15 14.046 rs141866277 0.06739 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1654368_H GCST90475372 hemoglobin (maximum, inv-norm transformed) 407,887 European ancestry individuals A 0.9745 2E-33 32.699 rs141866277 0.1019 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1654644_H GCST90475380 hemoglobin (minimum, inv-norm transformed) 407,894 European ancestry individuals A 0.9745 3E-12 11.523 rs141866277 0.05881 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1655097_H GCST90475442 mean corpuscular hemoglobin (MCH, maximum, inv-norm transformed) 407,288 European ancestry individuals A 0.9745 2E-22 21.699 rs141866277 0.09042 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1655234_H GCST90475352 high density lipoprotein cholesterol (HDLC, mean, inv-norm transformed) 404,121 European ancestry individuals A 0.9744 4E-86 85.398 rs141866277 0.1936 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1655675_H GCST90475376 hemoglobin (mean, inv-norm transformed) 407,894 European ancestry individuals A 0.9745 3E-23 22.523 rs141866277 0.08393 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1656426_H GCST90475446 mean corpuscular hemoglobin (MCH, mean, inv-norm transformed) 407,342 European ancestry individuals A 0.9745 4E-23 22.398 rs141866277 0.09307 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1661225_H GCST90476439 triglyceride (minimum, inv-norm transformed) 391,797 European ancestry individuals A 0.9743 2E-83 82.699 rs141866277 0.181 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1664801_H GCST90476431 triglyceride (maximum, inv-norm transformed) 391,247 European ancestry individuals A 0.9743 6E-67 66.222 rs141866277 0.1598 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1664839_H GCST90476435 triglyceride (mean, inv-norm transformed) 391,626 European ancestry individuals A 0.9743 2E-87 86.699 rs141866277 0.1887 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1669147_H GCST90475458 mean corpuscular hemoglobin concentration (MCHC, mean, inv-norm transformed) 407,345 European ancestry individuals A 0.9745 4E-27 26.398 rs141866277 0.09497 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1675148_H GCST90480717 triglyceride (maximum, inv-norm transformed) 107,605 African American or Afro-Caribbean individuals, 53,373 Hispanic or Latin American individuals, 5,787 East Asian ancestry individuals, 391,247 European ancestry individuals A 0.9787 2E-45 44.699 rs141866277 0.1583 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1675627_H GCST90480719 triglyceride (minimum, inv-norm transformed) 107,786 African American or Afro-Caribbean individuals, 53,539 Hispanic or Latin American individuals, 5,817 East Asian ancestry individuals, 391,797 European ancestry individuals A 0.9787 1E-55 55 rs141866277 0.1733 triglyceride measurement (EFO:0004530)
 PMID:39024449
1 to 20 of 26 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90479638 GWAS Catalog

Note Type Note Reference