GWAS1628031_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1628031_H (complex trait QTL GWAS1628031 (human)) Homo sapiens

Symbol: GWAS1628031_H
Name: complex trait QTL GWAS1628031 (human)
RGD ID: 597531957
Trait: complex trait
LOD Score: Not Available
P Value: 2.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,420,774 - 58,420,775RGD_MAPPER_PIPELINEGRCh38
GRCh371558,712,973 - 58,712,974RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1628031_HHumancomplex trait  IAGPrs11858279405850206 GWAS_CATALOGPMID:37277458

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11858279)
Human AssemblyChrPosition (strand)Source
GRCh381558,420,774 - 58,420,775RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597531957GWAS1628031_Hcomplex trait QTL GWAS1628031 (human)2e-17complex trait155842077458420775Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597491954GWAS1588028_Hcomplex trait QTL GWAS1588028 (human)4e-14complex trait155842077458420775Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1628031_H GCST90270119 Multi-trait sum score 141,980 European ancestry males ? NR 2E-17 16.699 rs11858279 N/A complex trait (EFO:0010578)
 PMID:37277458
GWAS1588028_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 4E-14 13.398 rs11858279 N/A complex trait (EFO:0010578)
 PMID:37277458
Database
Acc Id
Source(s)
GWAS Catalog GCST90270119 GWAS Catalog

Note Type Note Reference