GWAS1624750_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1624750_H (triacylglycerol 53:2 measurement QTL GWAS1624750 (human)) Homo sapiens

Symbol: GWAS1624750_H
Name: triacylglycerol 53:2 measurement QTL GWAS1624750 (human)
RGD ID: 597528676
Trait: triacylglycerol 53:2 measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,394,053 - 58,394,054RGD_MAPPER_PIPELINEGRCh38
GRCh371558,686,252 - 58,686,253RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1624750_HHumantriacylglycerol 53:2 measurement  IAGPrs261299405850206 GWAS_CATALOGPMID:36193934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs261299)
Human AssemblyChrPosition (strand)Source
GRCh381558,394,053 - 58,394,054RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597425337GWAS1521411_Hphosphatidylethanolamine measurement QTL GWAS1521411 (human)7e-13phosphatidylethanolamine measurement155839405358394054Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597528676GWAS1624750_Htriacylglycerol 53:2 measurement QTL GWAS1624750 (human)0.000006triacylglycerol 53:2 measurement155839405358394054Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1624750_H GCST90244533 Triacylglycerol (53:2) levels 4,642 European ancestry women A NR 0.000006 5.222 rs261299 0.1015 triacylglycerol 53:2 measurement (EFO:0021484)
 PMID:36193934
GWAS1521411_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 7E-13 12.155 rs261299 0.0613 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals A NR 7E-13 12.155 rs261299 0.0646 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060696 Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals G NR 7E-13 12.155 rs261299 0.0425 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 7E-13 12.155 rs261299 0.0744 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 7E-13 12.155 rs261299 0.1871 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
Database
Acc Id
Source(s)
GWAS Catalog GCST90244533 GWAS Catalog

Note Type Note Reference