GWAS1624410_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1624410_H (level of Phosphatidylethanolamine (18:0_18:2) in blood serum QTL GWAS1624410 (human)) Homo sapiens

Symbol: GWAS1624410_H
Name: level of Phosphatidylethanolamine (18:0_18:2) in blood serum QTL GWAS1624410 (human)
RGD ID: 597528336
Trait: level of Phosphatidylethanolamine (18:0_18:2) in blood serum
LOD Score: Not Available
P Value: 5.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,268,807 - 58,268,808RGD_MAPPER_PIPELINEGRCh38
GRCh371558,561,006 - 58,561,007RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1624410_HHumanlevel of Phosphatidylethanolamine (18:0_18:2) in blood serum  IAGPrs55966152405850206 GWAS_CATALOGPMID:36193934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs55966152)
Human AssemblyChrPosition (strand)Source
GRCh381558,268,807 - 58,268,808RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597524798GWAS1620872_Hlevel of Phosphatidylethanolamine (18:1_18:1) in blood serum QTL GWAS1620872 (human)0.000001level of Phosphatidylethanolamine (18:1_18:1) in blood serum155826880758268808Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597426110GWAS1522184_Hphosphatidylethanolamine measurement QTL GWAS1522184 (human)4e-11phosphatidylethanolamine measurement155826880758268808Human
597428502GWAS1524576_Hphosphatidylethanolamine measurement QTL GWAS1524576 (human)3e-11phosphatidylethanolamine measurement155826880758268808Human
597533185GWAS1629259_Hlevel of Phosphatidylcholine (O-16:1_18:2) in blood serum QTL GWAS1629259 (human)0.000008level of Phosphatidylcholine (O-16:1_18:2) in blood serum155826880758268808Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597528336GWAS1624410_Hlevel of Phosphatidylethanolamine (18:0_18:2) in blood serum QTL GWAS1624410 (human)5e-08level of Phosphatidylethanolamine (18:0_18:2) in blood serum155826880758268808Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1624410_H GCST90244479 Phosphatidylethanolamine (18:0_18:2) levels 4,642 European ancestry women G NR 5E-8 7.302 rs55966152 0.1916 level of Phosphatidylethanolamine (18:0_18:2) in blood serum (OBA:2045139)
 PMID:36193934
GWAS1522184_H GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals G NR 4E-11 10.398 rs55966152 0.0243 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 4E-11 10.398 rs55966152 0.0791 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1524576_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals A NR 3E-11 10.523 rs55966152 0.0718 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS1620872_H GCST90244481 Phosphatidylethanolamine (18:1_18:1) levels 4,642 European ancestry women G NR 0.000001 6 rs55966152 0.1722 level of Phosphatidylethanolamine (18:1_18:1) in blood serum (OBA:2045142)
 PMID:36193934
GWAS1629259_H GCST90244460 Phosphatidylcholine (O-16:1_18:2) levels 4,642 European ancestry women G NR 0.000008 5.097 rs55966152 0.1576 level of Phosphatidylcholine (O-16:1_18:2) in blood serum (OBA:2045121)
 PMID:36193934
Database
Acc Id
Source(s)
GWAS Catalog GCST90244479 GWAS Catalog

Note Type Note Reference