GWAS1620460_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1620460_H (cholesteryl ester measurement QTL GWAS1620460 (human)) Homo sapiens

Symbol: GWAS1620460_H
Name: cholesteryl ester measurement QTL GWAS1620460 (human)
RGD ID: 597524386
Trait: blood lipid amount   (VT:0003949)    
LOD Score: Not Available
P Value: 5.0E-29
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,288,582 - 58,288,583RGD_MAPPER_PIPELINEGRCh38
GRCh371558,580,781 - 58,580,782RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1620460_HHumanblood lipid amount  IAGPrs1560390405850206 GWAS_CATALOGPMID:36764567

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1620460_HHumancholesteryl ester measurement  IAGPrs1560390405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1560390)
Human AssemblyChrPosition (strand)Source
GRCh381558,288,582 - 58,288,583RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597525105GWAS1621179_Hphospholipids:total lipids ratio QTL GWAS1621179 (human)2e-24phospholipids:total lipids ratio155828858258288583Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597511120GWAS1607194_Hdocosahexaenoic acid measurement QTL GWAS1607194 (human)4e-25fatty acid amount (VT:0010046)blood free fatty acids level (CMO:0000117)155828858258288583Human
597514195GWAS1610269_Homega-3 polyunsaturated fatty acid measurement QTL GWAS1610269 (human)1e-09omega-3 polyunsaturated fatty acid measurement155828858258288583Human
597516435GWAS1612509_Hcholesterol to total lipids in small HDL percentage QTL GWAS1612509 (human)2e-33cholesterol to total lipids in small HDL percentage 155828858258288583Human
597524386GWAS1620460_Hcholesteryl ester measurement QTL GWAS1620460 (human)5e-29blood lipid amount (VT:0003949)155828858258288583Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1620460_H GCST90269659 Cholesteryl esters in large HDL (UKB data field 23562) 88,329 European ancestry individuals C 0.219533 5E-29 28.302 rs1560390 0.0577591 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS1791245_H GCST90269528 Average diameter for VLDL particles (UKB data field 23431) 88,329 European ancestry individuals C 0.219533 2E-22 21.699 rs1560390 0.0527042 VLDL particle size (OBA:2050114)
 PMID:36764567
GWAS1607194_H GCST90133361 Circulating docosahexaenoic acid levels 114,999 European ancestry individuals T 0.78 4E-25 24.398 rs1560390 0.05 docosahexaenoic acid measurement (EFO:0007761)
 PMID:35692035
GWAS1610269_H GCST90269548 Omega-3 fatty acids to total fatty acids percentage (UKB data field 23451) 88,268 European ancestry individuals C 0.219577 1E-9 9 rs1560390 0.0336391 omega-3 polyunsaturated fatty acid measurement (EFO:0010119)
 PMID:36764567
GWAS1612509_H GCST90269742 Cholesterol to total lipids in small HDL percentage (UKB data field 23645) 88,329 European ancestry individuals C 0.219533 2E-33 32.699 rs1560390 0.0683578 cholesterol to total lipids in small HDL percentage (EFO:0022240)
 PMID:36764567
GWAS1621179_H GCST90269711 Phospholipids to total lipids in large LDL percentage (UKB data field 23614) 88,329 European ancestry individuals C 0.219533 2E-24 23.699 rs1560390 0.0583565 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
Database
Acc Id
Source(s)
GWAS Catalog GCST90269659 GWAS Catalog

Note Type Note Reference